The SBASE protein domain library, release 7.0: a collection of annotated protein sequence segments

J Murvai; K Vlahovicek; E Barta; B Cataletto; S Pongor

doi:10.1093/nar/28.1.260

The SBASE protein domain library, release 7.0: a collection of annotated protein sequence segments

Nucleic Acids Res. 2000 Jan 1;28(1):260-2. doi: 10.1093/nar/28.1.260.

Authors

J Murvai¹, K Vlahovicek, E Barta, B Cataletto, S Pongor

Affiliation

¹ International Centre for Genetic Engineering, Area Science Park, 34012 Trieste, Italy.

Abstract

SBASE 7.0 is the seventh release of the SBASE protein domain library sequences that contains 237 937 annotated structural, functional, ligand-binding and topogenic segments of proteins, cross-referenced to all major sequence databases and sequence pattern collections. The entries are clustered into over 1811 groups and are provided with two WWW-based search facilities for on-line use. SBASE 7.0 is freely available by anonymous 'ftp' file transfer from ftp.icgeb. trieste.it. Automated searching of SBASE with BLAST can be carried out with the WWW servers http://www.icgeb.trieste.it/sbase/and http://sbase.abc.hu/sbase/

Publication types

Research Support, Non-U.S. Gov't

MeSH terms

Amino Acid Sequence
Database Management Systems*
Databases, Factual*
Internet
Proteins / chemistry*

Substances

Proteins