NBP-45, a novel nucleosomal binding protein with a tissue-specific and developmentally regulated expression

J Biol Chem. 2000 Mar 3;275(9):6368-74. doi: 10.1074/jbc.275.9.6368.

Abstract

Here we characterize a novel murine nuclear protein, which we named NBP-45, that is related to the ubiquitous nuclear proteins HMG-14/-17, binds specifically to nucleosome core particles, and can function as a transcriptional activator. NBP-45 mRNA is expressed at low levels and in variable amounts in all mouse tissues tested but is especially abundant in RNA extracted from 7-day-old mouse embryos, suggesting that it functions in early embryonic development. NBP-45 is composed of 406 amino acids and is encoded by a single size transcript. The region spanning the N-terminal 85 amino acids contains three segments that are highly homologous to functionally important domains in the HMG-14/-17 protein family: the nuclear localization signal, the nucleosome binding domain, and the chromatin unfolding domain. The protein region spanning the C-terminal 321 amino acids has a 42% content of negatively charged residues. The first 23 amino acids contain a region necessary for nuclear entry of the protein, the region spanning residues 12-40 is the main nucleosomal binding domain of the protein, and the negatively charged, C-terminal domain is necessary for transcription activation. The functional domains of NBP-45 are indicative of a nuclear protein that binds to nucleosomes, thereby creating a chromatin region of high local negative charge. Our studies establish the nucleosomal binding domain as a protein motif that is present in other than just the ubiquitous HMG-14/-17 proteins. We suggest that the nucleosomal binding domain motif is a protein module that facilitates binding to nucleosomes in chromatin.

MeSH terms

  • Amino Acid Sequence
  • Animals
  • Base Sequence
  • Carrier Proteins / genetics*
  • Chromatin / metabolism
  • Cloning, Molecular
  • Fluorescent Antibody Technique
  • Gene Expression Regulation, Developmental / genetics*
  • HMGN Proteins
  • HeLa Cells
  • High Mobility Group Proteins / chemistry
  • High Mobility Group Proteins / genetics
  • Humans
  • Mice
  • Molecular Sequence Data
  • Nuclear Proteins / chemistry
  • Nuclear Proteins / genetics*
  • Nucleosomes / metabolism*
  • Protein Binding
  • RNA, Messenger / metabolism
  • Sequence Alignment
  • Trans-Activators / chemistry
  • Trans-Activators / genetics*
  • Transfection

Substances

  • Carrier Proteins
  • Chromatin
  • HMGN Proteins
  • High Mobility Group Proteins
  • Hmgn5 protein, mouse
  • Nuclear Proteins
  • Nucleosomes
  • RNA, Messenger
  • Trans-Activators

Associated data

  • GENBANK/AF213454