Determination of the mechanism of orotidine 5'-monophosphate decarboxylase by isotope effects

Biochemistry. 2000 Apr 25;39(16):4569-74. doi: 10.1021/bi000376p.

Abstract

Orotidine 5'-monophosphate shows a (15)N isotope effect of 1.0036 at N-1 for decarboxylation catalyzed by orotidine 5'-monophosphate decarboxylase. Picolinic acid shows a (15)N isotope effect of 0.9955 for decarboxylation in ethylene glycol at 190 degrees C, while N-methyl picolinic acid shows a (15)N isotope effect of 1.0053 at 120 degrees C. The transition state for enzymatic decarboxylation of orotidine 5'-monophosphate resembles the transition state for N-methyl picolinic acid in that no bond order changes take place at N-1. This rules out enolization to give a quaternary nitrogen at N-1 in the enzymatic mechanism and suggests a carbanion intermediate stabilized by simple electrostatic interaction with Lys-93. The driving force for the reaction appears to be ground-state destabilization resulting from charge repulsion between the carboxyl of the substrate and Asp-91.

Publication types

  • Comparative Study
  • Research Support, U.S. Gov't, P.H.S.

MeSH terms

  • Ammonia / metabolism
  • Catalysis
  • Chromatography, High Pressure Liquid
  • Ethylene Glycol
  • Hot Temperature
  • Hydrogen-Ion Concentration
  • Hydrolysis
  • Kinetics
  • Magnetic Resonance Spectroscopy
  • Nitrogen / metabolism*
  • Nitrogen Isotopes
  • Orotidine-5'-Phosphate Decarboxylase / metabolism*
  • Picolinic Acids / metabolism
  • Protons
  • Static Electricity
  • Uridine Monophosphate / analogs & derivatives*
  • Uridine Monophosphate / metabolism

Substances

  • Nitrogen Isotopes
  • Picolinic Acids
  • Protons
  • orotidylic acid
  • Ammonia
  • Uridine Monophosphate
  • Orotidine-5'-Phosphate Decarboxylase
  • Ethylene Glycol
  • Nitrogen
  • picolinic acid