Crystal structure of T7 gene 4 ring helicase indicates a mechanism for sequential hydrolysis of nucleotides

Cell. 2000 Jun 9;101(6):589-600. doi: 10.1016/s0092-8674(00)80871-5.

Abstract

We have determined the crystal structure of an active, hexameric fragment of the gene 4 helicase from bacteriophage T7. The structure reveals how subunit contacts stabilize the hexamer. Deviation from expected six-fold symmetry of the hexamer indicates that the structure is of an intermediate on the catalytic pathway. The structural consequences of the asymmetry suggest a "binding change" mechanism to explain how cooperative binding and hydrolysis of nucleotides are coupled to conformational changes in the ring that most likely accompany duplex unwinding. The structure of a complex with a nonhydrolyzable ATP analog provides additional evidence for this hypothesis, with only four of the six possible nucleotide binding sites being occupied in this conformation of the hexamer. This model suggests a mechanism for DNA translocation.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Bacteriophage T7
  • DNA Helicases / chemistry*
  • Hydrolysis
  • Nucleotides / chemistry
  • Protein Conformation

Substances

  • Nucleotides
  • DNA Helicases

Associated data

  • PDB/1EOJ
  • PDB/1EOK