"Rule of six": how does the Sendai virus RNA polymerase keep count?

J Virol. 2001 May;75(10):4506-18. doi: 10.1128/JVI.75.10.4506-4518.2001.

Abstract

The "rule of six" stipulates that the Paramyxovirus RNA polymerase efficiently replicates only viral genomes counting 6n + 0 nucleotides. Because the nucleocapsid proteins (N) interact with 6 nucleotides, an exact nucleotide-N match at the RNA 3'-OH end (3'-OH congruence) may be required for recognition of an active replication promoter. Alternatively, assuming that the six positions for the interaction of N with the nucleotides are not equivalent, the nucleotide position relative to N may be critical (N phase context). The replication abilities of various minireplicons, designed so that the 3'-OH congruence could be discriminated from the N phase context, were studied. The results strongly suggest that the application of the rule of six depends on the recognition of nucleotides positioned in the proper N phase context.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • DNA-Directed RNA Polymerases / metabolism*
  • HeLa Cells
  • Humans
  • Promoter Regions, Genetic
  • RNA, Viral / biosynthesis*
  • Respirovirus / enzymology*
  • Respirovirus / genetics
  • Respirovirus / physiology
  • Templates, Genetic
  • Tumor Cells, Cultured
  • Viral Proteins / metabolism
  • Virus Replication*

Substances

  • RNA, Viral
  • Viral Proteins
  • nonstructural C protein, Sendai virus
  • DNA-Directed RNA Polymerases