Identification of a cis-acting element required for shunt-mediated translational initiation of the Sendai virus Y proteins

Nucleic Acids Res. 2003 Jan 15;31(2):608-18. doi: 10.1093/nar/gkg143.

Abstract

Shunting is a mechanism that permits translational initiation at internal codons positioned in proximity to a ribosome acceptor sequence. Sendai virus exploits shunting to express a series of proteins that initiate at the fourth and fifth start sites on the P/C mRNA (namely, the Y1 and Y2 proteins, respectively). Shunt-mediated initiation at these sites is codon independent. In an attempt to characterise the acceptor site, an extensive deletion analysis was performed spanning the entire C ORF. Only mutants flanking the Y1/Y2 start sites exhibited altered shunt phenotypes. Some of these significantly enhanced shunting efficiency to the point where the Y1/Y2 proteins were the major translational products of the mRNA. Additionally, removal of a short region just downstream of the Y2 start codon (referred to as Delta10) ablated all Y protein initiation via shunting but had no effect on Y expression when the AUG codons were viewed by a scanning ribosome. Point mutations introduced into this Delta10 sequence severely perturbed shunt-mediated initiation. We also provide evidence that changes in this region of the P/C mRNA may be used to modulate Y protein expression levels in different viral strains.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Base Sequence
  • Codon, Initiator / genetics
  • DNA, Viral / genetics
  • Electrophoresis, Polyacrylamide Gel
  • Gene Expression Regulation, Viral
  • HeLa Cells
  • Humans
  • Mutation
  • Plasmids / genetics
  • Protein Biosynthesis / genetics*
  • Regulatory Sequences, Nucleic Acid / genetics
  • Sendai virus / genetics*
  • Sequence Deletion
  • Sequence Homology, Nucleic Acid
  • Transfection
  • Tumor Cells, Cultured
  • Viral Proteins / genetics*
  • Viral Proteins / metabolism

Substances

  • Codon, Initiator
  • DNA, Viral
  • Viral Proteins