Pathway studio--the analysis and navigation of molecular networks

Alexander Nikitin; Sergei Egorov; Nikolai Daraselia; Ilya Mazo

doi:10.1093/bioinformatics/btg290

Pathway studio--the analysis and navigation of molecular networks

Bioinformatics. 2003 Nov 1;19(16):2155-7. doi: 10.1093/bioinformatics/btg290.

Authors

Alexander Nikitin¹, Sergei Egorov, Nikolai Daraselia, Ilya Mazo

Affiliation

¹ Ariadne Genomics, Inc., 9700 Great Seneca Hgwy, Rockville, MD 20850, USA.

PMID: 14594725
DOI: 10.1093/bioinformatics/btg290

Abstract

Summary: PathwayAssist is a software application developed for navigation and analysis of biological pathways, gene regulation networks and protein interaction maps. It comes with the built-in natural language processing module MedScan and the comprehensive database describing more than 100 000 events of regulation, interaction and modification between proteins, cell processes and small molecules.

Availability: PathwayAssist is available for commercial licensing from Ariadne Genomics, Inc. The light version with limited functionality will be available for free for academic users at www.ariadnegenomics.com/downloads/.

MeSH terms

Database Management Systems*
Databases, Protein*
Gene Expression Regulation / physiology*
Information Storage and Retrieval / methods*
Metabolism / physiology*
Models, Biological
Protein Interaction Mapping / methods*
Software*
User-Computer Interface*