Alkalibacterium psychrotolerans sp. nov., a psychrotolerant obligate alkaliphile that reduces an indigo dye

Int J Syst Evol Microbiol. 2004 Nov;54(Pt 6):2379-2383. doi: 10.1099/ijs.0.63130-0.

Abstract

A psychrotolerant, obligately alkaliphilic bacterium, IDR2-2(T), which is able to reduce indigo dye was isolated from a fermented polygonum indigo (Polygonum tinctorium Lour.) produced in Date, Hokkaido, using a traditional Japanese method. The isolate grew at pH 9-12 but not at pH 7-8. It was a Gram-positive, facultatively anaerobic, straight rod-shaped bacterium with peritrichous flagella. The isolate grew in 0-17 % (w/v) NaCl but not at NaCl concentrations higher than 18 % (w/v). Its major cellular fatty acids were C(14 : 0), C(16 : 0), C(16 : 1)9c and C(18 : 1)9c, and its DNA G+C content was 40.6 mol%. dl-lactic acid was the major end-product from d-glucose. No quinones could be detected. The peptidoglycan type was A4beta, Orn-d-Glu. A phylogenetic analysis based on 16S rRNA gene sequence data indicated that strain IDR2-2(T) is a member of the genus Alkalibacterium. DNA-DNA hybridization revealed low relatedness (less than 25 %) between the isolate and two phylogenetically related strains, Alkalibacterium olivapovliticus and Marinilactibacillus psychrotolerans. On the basis of phenotypic characteristics, phylogenetic data and DNA-DNA relatedness data, the isolate merits classification as a novel species, for which the name Alkalibacterium psychrotolerans sp. nov. is proposed. The type strain is IDR2-2(T) (=JCM 12281(T)=NCIMB 13981(T)).

MeSH terms

  • Anaerobiosis
  • Bacterial Typing Techniques
  • Base Composition
  • Cold Temperature
  • DNA, Bacterial / chemistry
  • DNA, Bacterial / isolation & purification
  • DNA, Ribosomal / chemistry
  • DNA, Ribosomal / isolation & purification
  • Fatty Acids / analysis
  • Fatty Acids / chemistry
  • Fatty Acids / isolation & purification
  • Fermentation
  • Flagella
  • Genes, rRNA
  • Gentian Violet
  • Glucose / metabolism
  • Gram-Positive Bacteria / classification*
  • Gram-Positive Bacteria / cytology
  • Gram-Positive Bacteria / isolation & purification*
  • Gram-Positive Bacteria / metabolism
  • Hydrogen-Ion Concentration
  • Indigo Carmine
  • Indoles / metabolism*
  • Japan
  • Lactic Acid / metabolism
  • Molecular Sequence Data
  • Nucleic Acid Hybridization
  • Oxidation-Reduction
  • Peptidoglycan / chemistry
  • Peptidoglycan / isolation & purification
  • Phenazines
  • Phylogeny
  • Polygonum / microbiology*
  • Quinones / analysis
  • RNA, Bacterial / genetics
  • RNA, Ribosomal, 16S / genetics
  • Saline Solution, Hypertonic
  • Sequence Analysis, DNA

Substances

  • DNA, Bacterial
  • DNA, Ribosomal
  • Fatty Acids
  • Gram's stain
  • Indoles
  • Peptidoglycan
  • Phenazines
  • Quinones
  • RNA, Bacterial
  • RNA, Ribosomal, 16S
  • Saline Solution, Hypertonic
  • Lactic Acid
  • Indigo Carmine
  • Glucose
  • Gentian Violet

Associated data

  • GENBANK/AB125938