Structure of the vesicular stomatitis virus nucleoprotein-RNA complex

Science. 2006 Jul 21;313(5785):357-60. doi: 10.1126/science.1126953. Epub 2006 Jun 15.

Abstract

Vesicular stomatitis virus is a negative-stranded RNA virus. Its nucleoprotein (N) binds the viral genomic RNA and is involved in multiple functions including transcription, replication, and assembly. We have determined a 2.9 angstrom structure of a complex containing 10 molecules of the N protein and 90 bases of RNA. The RNA is tightly sequestered in a cavity at the interface between two lobes of the N protein. This serves to protect the RNA in the absence of polynucleotide synthesis. For the RNA to be accessed, some conformational change in the N protein should be necessary.

Publication types

  • Research Support, N.I.H., Extramural
  • Research Support, Non-U.S. Gov't

MeSH terms

  • Amino Acid Sequence
  • Crystallography, X-Ray
  • Hydrophobic and Hydrophilic Interactions
  • Models, Molecular
  • Molecular Sequence Data
  • Nucleic Acid Conformation
  • Nucleocapsid Proteins / chemistry*
  • Nucleocapsid Proteins / metabolism
  • Protein Conformation
  • Protein Structure, Secondary
  • Protein Structure, Tertiary
  • RNA, Viral / chemistry*
  • RNA, Viral / metabolism
  • Ribonucleoproteins / chemistry*
  • Sequence Alignment
  • Vesicular stomatitis Indiana virus / chemistry*

Substances

  • Nucleocapsid Proteins
  • RNA, Viral
  • Ribonucleoproteins

Associated data

  • PDB/2GIC