The canonical UPF1-dependent nonsense-mediated mRNA decay is inhibited in transcripts carrying a short open reading frame independent of sequence context

RNA. 2006 Dec;12(12):2160-70. doi: 10.1261/rna.201406. Epub 2006 Oct 31.

Abstract

Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism that degrades mRNAs carrying premature translation termination codons. Generally, NMD is elicited if translation terminates >50-54 nucleotides (nt) upstream of an exon-exon junction. We have previously reported that human beta-globin mRNAs carrying 5'-proximal nonsense mutations (e.g., beta15) accumulate to normal levels, suggesting an exception to the "50-54-nt boundary rule." In the present report, we demonstrate that the strength of the UPF1-dependent NMD of mutant beta-globin mRNAs is specifically determined by the proximity of the nonsense codon to the initiation AUG. This conclusion is supported by a parallel effect of the short ORF size on NMD of nonsense-containing alpha-globin mRNAs. To determine whether the short-ORF effect on NMD response is conserved in heterologous transcripts, we assessed its effects on a set of beta-globin/triosephosphate isomerase (TPI) hybrid mRNAs and on the TPI mRNA. Our data support the conclusion that nonsense mutations resulting in a short ORF are able to circumvent the full activity of the canonical UPF1-dependent NMD pathway.

Publication types

  • Research Support, N.I.H., Extramural
  • Research Support, Non-U.S. Gov't

MeSH terms

  • 5' Untranslated Regions
  • Animals
  • Codon, Initiator
  • Codon, Nonsense*
  • Globins / genetics
  • Globins / metabolism
  • Humans
  • Mice
  • Open Reading Frames*
  • Protein Biosynthesis
  • RNA Helicases
  • RNA Stability*
  • Recombinant Proteins / genetics
  • Recombinant Proteins / metabolism
  • Trans-Activators / genetics
  • Trans-Activators / metabolism*
  • Transcription, Genetic
  • Triose-Phosphate Isomerase / genetics
  • Triose-Phosphate Isomerase / metabolism

Substances

  • 5' Untranslated Regions
  • Codon, Initiator
  • Codon, Nonsense
  • Recombinant Proteins
  • Trans-Activators
  • Globins
  • RNA Helicases
  • UPF1 protein, human
  • Triose-Phosphate Isomerase