Carrier frequency of a nonsense mutation in the adenosine deaminase (ADA) gene implies a high incidence of ADA-deficient severe combined immunodeficiency (SCID) in Somalia and a single, common haplotype indicates common ancestry

Ann Hum Genet. 2007 May;71(Pt 3):336-47. doi: 10.1111/j.1469-1809.2006.00338.x. Epub 2007 Dec 19.

Abstract

Inherited adenosine deaminase (ADA) deficiency is a rare metabolic disorder that causes immunodeficiency, varying from severe combined immunodeficiency (SCID) in the majority of cases to a less severe form in a small minority of patients. Five patients of Somali origin from four unrelated families, with severe ADA-SCID, were registered in the Greater London area. Patients and their parents were investigated for the nonsense mutation Q3X (ADA c7C>T), two missense mutations K80R (ADA c239A>G) and R142Q (ADA c425G>A), and a TAAA repeat located at the 3' end of an Alu element (AluVpA) positioned 1.1 kb upstream of the ADA transcription start site. All patients were homozygous for the haplotype ADA-7T/ADA-239G/ADA-425G/AluVpA7. Among 207 Somali immigrants to Denmark, the frequency of ADA c7C>T and the maximum likelihood estimate of the frequency of the haplotype ADA-7T/ADA-239G/ADA-425G/AluVpA7 were both 0.012 (carrier frequency 2.4%). Based on the analysis of AluVpA alleles, the ADA c7C/T mutation was estimated to be approximately 7,100 years old. Approximately 1 out of 5 - 10000 Somali children will be born with ADA deficiency due to an ADA c7C/T mutation, although within certain clans the frequency may be significantly higher. ADA-SCID may be a frequent immunodeficiency disorder in Somalia, but will be underdiagnosed due to the prevailing socioeconomic and nutritional deprivation.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Adenosine Deaminase / genetics*
  • Alleles
  • Alu Elements
  • Base Sequence
  • Codon, Nonsense*
  • DNA Primers / genetics
  • Denmark
  • Evolution, Molecular
  • Female
  • Founder Effect
  • Gene Frequency
  • Haplotypes
  • Heterozygote
  • Humans
  • Infant
  • Infant, Newborn
  • London
  • Male
  • Microsatellite Repeats
  • Models, Genetic
  • Mutation, Missense
  • Severe Combined Immunodeficiency / enzymology*
  • Severe Combined Immunodeficiency / genetics*
  • Somalia / ethnology

Substances

  • Codon, Nonsense
  • DNA Primers
  • Adenosine Deaminase