Isolation and characterization of soil bacteria that define Terriglobus gen. nov., in the phylum Acidobacteria

Appl Environ Microbiol. 2007 Apr;73(8):2708-17. doi: 10.1128/AEM.02140-06. Epub 2007 Feb 9.

Abstract

Bacteria in the phylum Acidobacteria are widely distributed and abundant in soils, but their ecological roles are poorly understood, owing in part to a paucity of cultured representatives. In a molecular survey of acidobacterial diversity at the Michigan State University Kellogg Biological Station Long-Term Ecological Research site, 27% of acidobacterial 16S rRNA gene clones in a never-tilled, successional plant community belonged to subdivision 1, whose relative abundance varied inversely with soil pH. Strains of subdivision 1 were isolated from these never-tilled soils using low-nutrient medium incubated for 3 to 4 weeks under elevated levels of carbon dioxide, which resulted in a slightly acidified medium that matched the pH optima of the strains (between 5 and 6). Colonies were approximately 1 mm in diameter and either white or pink, the latter due to a carotenoid(s) that was synthesized preferentially under 20% instead of 2% oxygen. Strains were gram-negative, aerobic, chemo-organotrophic, nonmotile rods that produced an extracellular matrix. All strains contained either one or two copies of the 16S rRNA encoding gene, which along with a relatively slow doubling time (10 to 15 h at ca. 23 degrees C) is suggestive of an oligotrophic lifestyle. Six of the strains are sufficiently similar to one another, but distinct from previously named Acidobacteria, to warrant creation of a new genus, Terriglobus, with Terriglobus roseus defined as the type species. The physiological and nutritional characteristics of Terriglobus are consistent with its potential widespread distribution in soil.

Publication types

  • Research Support, U.S. Gov't, Non-P.H.S.

MeSH terms

  • Bacterial Typing Techniques
  • Blotting, Southern
  • Carbon / metabolism
  • Carotenoids / biosynthesis
  • DNA, Bacterial / chemistry
  • DNA, Bacterial / genetics
  • DNA, Ribosomal / chemistry
  • DNA, Ribosomal / genetics
  • Extracellular Matrix
  • Fatty Acids / analysis
  • Fatty Acids / chemistry
  • Genes, rRNA / genetics
  • Gram-Negative Aerobic Rods and Cocci / classification*
  • Gram-Negative Aerobic Rods and Cocci / cytology
  • Gram-Negative Aerobic Rods and Cocci / isolation & purification*
  • Gram-Negative Aerobic Rods and Cocci / physiology
  • Molecular Sequence Data
  • Movement
  • Phylogeny
  • Pigments, Biological / biosynthesis
  • RNA, Bacterial / genetics
  • RNA, Ribosomal, 16S / genetics
  • Sequence Analysis, DNA
  • Sequence Homology, Nucleic Acid
  • Soil Microbiology*

Substances

  • DNA, Bacterial
  • DNA, Ribosomal
  • Fatty Acids
  • Pigments, Biological
  • RNA, Bacterial
  • RNA, Ribosomal, 16S
  • Carotenoids
  • Carbon

Associated data

  • GENBANK/DQ660892
  • GENBANK/DQ660893
  • GENBANK/DQ660894
  • GENBANK/DQ660895