Regulation of alternative splicing by snoRNAs

Cold Spring Harb Symp Quant Biol. 2006:71:329-34. doi: 10.1101/sqb.2006.71.024.

Abstract

The SNURF-SNRPN locus located on chromosome 15 is maternally imprinted and generates a large transcript containing at least 148 exons. Loss of the paternal allele causes Prader-Willi syndrome (PWS). The 3' end of the transcript harbors several evolutionarily conserved C/D box small nucleolar RNAs (snoRNAs) that are tissue-specifically expressed. With the exception of 47 copies of HBII-52 snoRNAs, none of the snoRNAs exhibit complementarity to known RNAs. Due to an 18-nucleotide sequence complementarity, HBII-52 can bind to the alternatively spliced exon Vb of the serotonin receptor 2C pre-mRNA, where it masks a splicing silencer, which results in alternative exon usage. This silencer can also be destroyed by RNA editing, which changes the amino acid sequence and appears to be independent of HBII-52. Lack of HBII-52 expression in individuals with PWS causes most likely a lack of the high-efficacy serotonin receptor, which could contribute to the disease. It is therefore possible that snoRNAs could act as versatile modulators of gene expression by modulating alternative splicing.

Publication types

  • Research Support, Non-U.S. Gov't
  • Review

MeSH terms

  • Alternative Splicing*
  • Animals
  • Base Sequence
  • Exons
  • Female
  • Gene Expression
  • Genome, Human
  • Humans
  • Male
  • Nuclear Proteins / genetics
  • Nuclear Proteins / metabolism
  • Prader-Willi Syndrome / genetics
  • Prader-Willi Syndrome / metabolism
  • RNA, Small Nucleolar / genetics*
  • RNA, Small Nucleolar / metabolism*
  • Receptor, Serotonin, 5-HT2C / genetics
  • Receptor, Serotonin, 5-HT2C / metabolism

Substances

  • Nuclear Proteins
  • RNA, Small Nucleolar
  • Receptor, Serotonin, 5-HT2C
  • SNURF protein, human