Towards completion of the Earth's proteome

EMBO Rep. 2007 Dec;8(12):1135-41. doi: 10.1038/sj.embor.7401117.

Abstract

New protein sequences are deposited in databases at an accelerating pace; however, many of these are homologous to known proteins and could be considered redundant. If all historical releases of the protein database are analysed using the original sequence-clustering procedure described here, the fraction of newly sequenced proteins that are redundant is increasing. We interpret this as an indication that the sequencing of the Earth's proteome--the complete set of proteins on Earth--is approaching completion. We estimate the approximate size of the Earth's proteome to be 5 million sequences, most of which will be identified during the next 5 years. As the Earth's proteome nears completion, cluster analysis of the protein database will become essential to identify under-explored taxa to which future sequencing efforts should be directed and to focus research on protein families without experimental characterization.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Animals
  • Databases, Protein
  • Humans
  • Phylogeny
  • Proteins / analysis
  • Proteins / chemistry
  • Proteins / classification
  • Proteome / analysis*
  • Proteomics / methods*
  • Sequence Analysis, Protein / methods

Substances

  • Proteins
  • Proteome