Gene expression-based screening for inhibitors of PDGFR signaling

Genome Biol. 2008;9(3):R47. doi: 10.1186/gb-2008-9-3-r47. Epub 2008 Mar 1.

Abstract

Here we describe a proof-of-concept experiment designed to explore the possibility of using gene expression-based high-throughput screening (GE-HTS) to find inhibitors of a signaling cascade, using platelet derived growth factor receptor (PDGFR) signaling as the example. The previously unrecognized ability of aurintricarboxylic acid to inhibit PDGFR signaling, discovered through a screen of 1,739 compounds, demonstrates the feasibility and generalizability of GE-HTS for the discovery of small molecule modulators of any signaling pathway of interest.

Publication types

  • Research Support, N.I.H., Extramural
  • Research Support, Non-U.S. Gov't

MeSH terms

  • Aurintricarboxylic Acid / chemistry
  • Aurintricarboxylic Acid / pharmacology*
  • Cell Line, Tumor
  • Drug Evaluation, Preclinical / methods
  • Extracellular Signal-Regulated MAP Kinases / antagonists & inhibitors
  • Extracellular Signal-Regulated MAP Kinases / genetics
  • Extracellular Signal-Regulated MAP Kinases / metabolism
  • Gene Expression / drug effects*
  • Humans
  • Protein Kinase Inhibitors / chemistry
  • Protein Kinase Inhibitors / isolation & purification*
  • Protein Kinase Inhibitors / pharmacology*
  • Receptor, Platelet-Derived Growth Factor alpha / agonists
  • Receptor, Platelet-Derived Growth Factor alpha / antagonists & inhibitors*
  • Receptor, Platelet-Derived Growth Factor alpha / genetics
  • Receptor, Platelet-Derived Growth Factor beta / agonists
  • Receptor, Platelet-Derived Growth Factor beta / antagonists & inhibitors*
  • Receptor, Platelet-Derived Growth Factor beta / genetics
  • Signal Transduction / drug effects
  • Structure-Activity Relationship

Substances

  • Protein Kinase Inhibitors
  • Aurintricarboxylic Acid
  • Receptor, Platelet-Derived Growth Factor alpha
  • Receptor, Platelet-Derived Growth Factor beta
  • Extracellular Signal-Regulated MAP Kinases

Associated data

  • GEO/GSE7403