DNA forms of the geminivirus African cassava mosaic virus consistent with a rolling circle mechanism of replication

Nucleic Acids Res. 1991 May 11;19(9):2325-30. doi: 10.1093/nar/19.9.2325.

Abstract

We have analysed DNA from African cassava mosaic virus (ACMV)-infected Nicotiana benthamiana by two-dimensional agarose gel electrophoresis and detected ACMV-specific DNAs by blot-hybridisation. ACMV DNA forms including the previously characterised single-stranded, open-circular, linear and supercoiled DNAs along with five previously uncharacterised heterogeneous DNAs (H1-H5) were resolved. The heterogeneous DNAs were characterised by their chromatographic properties on BND-cellulose and their ability to hybridise to strand-specific and double-stranded probes. The data suggest a rolling circle mechanism of DNA replication, based on the sizes and strand specificity of the heterogeneous single-stranded DNA forms and their electrophoretic properties in relation to genome length single-stranded DNAs. Second-strand synthesis on a single-stranded virus-sense template is evident from the position of heterogeneous subgenomic complementary-sense DNA (H3) associated with genome-length virus-sense template (VT) DNA. The position of heterogeneous virus-sense DNA (H5), ranging in size from one to two genome lengths, is consistent with its association with genome-length complementary-sense template (CT) DNA, reflecting virus-sense strand displacement during replication from a double-stranded intermediate. The absence of subgenomic complementary-sense DNA associated with the displaced virus-sense strand suggests that replication proceeds via an obligate single-stranded intermediate. The other species of heterogeneous DNAs comprised concatemeric single-stranded virus-sense DNA (H4), and double-stranded or partially single-stranded DNA (H1 and H2).

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Chromatography
  • DNA Replication*
  • DNA, Single-Stranded / genetics
  • DNA, Single-Stranded / isolation & purification
  • DNA, Viral / biosynthesis
  • DNA, Viral / genetics*
  • DNA, Viral / isolation & purification
  • Electrophoresis, Gel, Two-Dimensional
  • Mosaic Viruses / genetics*

Substances

  • DNA, Single-Stranded
  • DNA, Viral