Cytochrome P450 compound I: capture, characterization, and C-H bond activation kinetics

Science. 2010 Nov 12;330(6006):933-7. doi: 10.1126/science.1193478.

Abstract

Cytochrome P450 enzymes are responsible for the phase I metabolism of approximately 75% of known pharmaceuticals. P450s perform this and other important biological functions through the controlled activation of C-H bonds. Here, we report the spectroscopic and kinetic characterization of the long-sought principal intermediate involved in this process, P450 compound I (P450-I), which we prepared in approximately 75% yield by reacting ferric CYP119 with m-chloroperbenzoic acid. The Mössbauer spectrum of CYP119-I is similar to that of chloroperoxidase compound I, although its electron paramagnetic resonance spectrum reflects an increase in |J|/D, the ratio of the exchange coupling to the zero-field splitting. CYP119-I hydroxylates the unactivated C-H bonds of lauric acid [D(C-H) ~ 100 kilocalories per mole], with an apparent second-order rate constant of k(app) = 1.1 × 10(7) per molar per second at 4°C. Direct measurements put a lower limit of k ≥ 210 per second on the rate constant for bound substrate oxidation, whereas analyses involving kinetic isotope effects predict a value in excess of 1400 per second.

Publication types

  • Research Support, U.S. Gov't, Non-P.H.S.

MeSH terms

  • Biocatalysis
  • Catalytic Domain
  • Chemical Phenomena
  • Chlorobenzoates / chemistry
  • Cytochrome P-450 Enzyme System / chemistry*
  • Cytochrome P-450 Enzyme System / isolation & purification*
  • Cytochrome P-450 Enzyme System / metabolism*
  • Electron Spin Resonance Spectroscopy
  • Fatty Acids / chemistry
  • Fatty Acids / metabolism
  • Freezing
  • Hydroxylation
  • Kinetics
  • Lauric Acids / chemistry
  • Lauric Acids / metabolism
  • Ligands
  • Oxidation-Reduction
  • Oxygen / chemistry
  • Oxygen / metabolism
  • Spectroscopy, Mossbauer
  • Sulfolobus acidocaldarius / enzymology

Substances

  • Chlorobenzoates
  • Fatty Acids
  • Lauric Acids
  • Ligands
  • lauric acid
  • Cytochrome P-450 Enzyme System
  • 3-chloroperbenzoic acid
  • Oxygen