Binding-activated localization microscopy of DNA structures

Nano Lett. 2011 Sep 14;11(9):4008-11. doi: 10.1021/nl2025954. Epub 2011 Aug 18.

Abstract

Many nucleic acid stains show a strong fluorescence enhancement upon binding to double-stranded DNA. Here we exploit this property to perform superresolution microscopy based on the localization of individual binding events. The dynamic labeling scheme and the optimization of fluorophore brightness yielded a resolution of ∼14 nm (fwhm) and a spatial sampling of 1/nm. We illustrate our approach with two different DNA-binding dyes and apply it to visualize the organization of the bacterial chromosome in fixed Escherichia coli cells. In general, the principle of binding-activated localization microscopy (BALM) can be extended to other dyes and targets such as protein structures.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Bacterial Proteins / metabolism
  • DNA / chemistry*
  • Escherichia coli / metabolism
  • Fluorescent Dyes / pharmacology
  • Green Fluorescent Proteins / metabolism
  • Intercalating Agents / pharmacology
  • Microscopy / methods*
  • Microscopy, Fluorescence / methods*
  • Nanotechnology / methods
  • Organic Chemicals / pharmacology
  • Protein Binding

Substances

  • Bacterial Proteins
  • Fluorescent Dyes
  • Intercalating Agents
  • Organic Chemicals
  • PicoGreen
  • Green Fluorescent Proteins
  • DNA