Solution structures of human transforming growth factor alpha derived from 1H NMR data

Biochemistry. 1990 Aug 28;29(34):7805-13. doi: 10.1021/bi00486a005.

Abstract

The 600-MHz 1H NMR spectrum of the des-Val-Val mutant of human transforming growth factor alpha (TGF-alpha) was reassigned at pH = 6.3. The conformation space of des-Val-Val TGF-alpha was explored by distance geometry embedding followed by restrained molecular dynamics refinement using NOE distance constraints and some torsion angle constraints derived from J-couplings. Over 80 long-range NOE constraints were found by completely assigning all resolved cross-peaks in the NOESY spectra. Low NOE constraint violations were observed in structures obtained with the following three different refinement procedures: interactive annealing in DSPACE, AMBER 3.0 restrained molecular dynamics, and dynamic simulated annealing in XPLOR. The segment from Phe15 to Asp47 was found to be conformationally well-defined. Back-calculations of NOESY spectra were used to evaluate the quality of the structures. Our calculated structures resemble the ribbon diagram presentations that were recently reported by other groups. Several side-chain conformations appear to be well-defined as does the relative orientation of the C loop to the N-terminal half of the protein.

Publication types

  • Research Support, U.S. Gov't, P.H.S.

MeSH terms

  • Computer Simulation
  • Humans
  • Hydrogen
  • Magnetic Resonance Spectroscopy
  • Models, Molecular
  • Mutation
  • Protein Conformation
  • Solutions
  • Stereoisomerism
  • Transforming Growth Factor alpha / chemistry*
  • Transforming Growth Factor alpha / genetics

Substances

  • Solutions
  • Transforming Growth Factor alpha
  • Hydrogen