Identification and characterization of a cellulase-encoding gene from the buffalo rumen metagenomic library

Biosci Biotechnol Biochem. 2012;76(6):1075-84. doi: 10.1271/bbb.110786. Epub 2012 Jun 7.

Abstract

Microorganisms residing in the rumens of cattle represent a rich source of lignocellulose-degrading enzymes, since their diet consists of plant-based materials that are high in cellulose and hemicellulose. In this study, a metagenomic library was constructed from buffalo rumen contents using pCC1FOS fosmid vector. Ninety-three clones from the pooled library of approximately 10,000 clones showed degrading activity against AZCL-HE-Cellulose, whereas four other clones showed activity against AZCL-Xylan. Contig analysis of pyrosequencing data derived from the selected strongly positive clones revealed 15 ORFs that were closely related to lignocellulose-degrading enzymes belonging to several glycosyl hydrolase families. Glycosyl hydrolase family 5 (GHF5) was the most abundant glycosyl hydrolase found, and a majority of the GHF5s in our metagenomes were closely related to several ruminal bacteria, especially ones from other buffalo rumen metagenomes. Characterization of BT-01, a selected clone with highest cellulase activity from the primary plate screening assay, revealed a cellulase encoding gene with optimal working conditions at pH 5.5 at 50 °C. Along with its stability over acidic pH, the capability efficiently to hydrolyze cellulose in feed for broiler chickens, as exhibited in an in vitro digestibility test, suggests that BT-01 has potential application as a feed supplement.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Amino Acid Sequence
  • Animal Feed
  • Animals
  • Bacterial Proteins / genetics
  • Bacterial Proteins / isolation & purification*
  • Bacterial Proteins / metabolism
  • Buffaloes
  • Cellulases / genetics
  • Cellulases / isolation & purification*
  • Cellulases / metabolism
  • Cloning, Molecular
  • Enzyme Stability
  • Gene Library
  • Genetic Vectors
  • Hydrogen-Ion Concentration
  • Lignin / metabolism*
  • Metagenome*
  • Metagenomics
  • Microbial Consortia / genetics
  • Molecular Sequence Data
  • Open Reading Frames
  • Phylogeny
  • Rumen / enzymology
  • Rumen / microbiology
  • Sequence Analysis, DNA
  • Temperature
  • Xylans / metabolism

Substances

  • Bacterial Proteins
  • Xylans
  • lignocellulose
  • Lignin
  • Cellulases