A new member of the 4-methylideneimidazole-5-one-containing aminomutase family from the enediyne kedarcidin biosynthetic pathway

Proc Natl Acad Sci U S A. 2013 May 14;110(20):8069-74. doi: 10.1073/pnas.1304733110. Epub 2013 Apr 30.

Abstract

4-Methylideneimidazole-5-one (MIO)-containing aminomutases catalyze the conversion of L-α-amino acids to β-amino acids with either an (R) or an (S) configuration. L-phenylalanine and L-tyrosine are the only two natural substrates identified to date. The enediyne chromophore of the chromoprotein antitumor antibiotic kedarcidin (KED) harbors an (R)-2-aza-3-chloro-β-tyrosine moiety reminiscent of the (S)-3-chloro-5-hydroxy-β-tyrosine moiety of the C-1027 enediyne chromophore, the biosynthesis of which uncovered the first known MIO-containing aminomutase, SgcC4. Comparative analysis of the KED and C-1027 biosynthetic gene clusters inspired the proposal for (R)-2-aza-3-chloro-β-tyrosine biosynthesis starting from 2-aza-L-tyrosine, featuring KedY4 as a putative MIO-containing aminomutase. Here we report the biochemical characterization of KedY4, confirming its proposed role in KED biosynthesis. KedY4 is an MIO-containing aminomutase that stereospecifically catalyzes the conversion of 2-aza-L-tyrosine to (R)-2-aza-β-tyrosine, exhibiting no detectable activity toward 2-aza-L-phenylalanine or L-tyrosine as an alternative substrate. In contrast, SgcC4, which stereospecifically catalyzes the conversion of L-tyrosine to (S)-β-tyrosine in C-1027 biosynthesis, exhibits minimal activity with 2-aza-L-tyrosine as an alternative substrate but generating (S)-2-aza-β-tyrosine, a product with the opposite stereochemistry of KedY4. This report of KedY4 broadens the scope of known substrates for the MIO-containing aminomutase family, and comparative studies of KedY4 and SgcC4 provide an outstanding opportunity to examine how MIO-containing aminomutases control substrate specificity and product enantioselectivity.

Keywords: Streptoalloteichus sp.; Streptomyces globisporus; amonia lyase; enzyme; natural product.

Publication types

  • Research Support, N.I.H., Extramural

MeSH terms

  • Ammonia / chemistry
  • Antineoplastic Agents / pharmacology
  • Computational Biology
  • Cycloparaffins / chemistry*
  • Enediynes / chemistry*
  • Imidazoles / chemistry*
  • Imidazoles / metabolism
  • Intramolecular Transferases / chemistry*
  • Intramolecular Transferases / metabolism
  • Kinetics
  • Lyases / chemistry
  • Molecular Sequence Data
  • Naphthalenes / chemistry*
  • Phenylalanine / chemistry
  • Streptomyces / metabolism
  • Substrate Specificity
  • Tyrosine / chemistry

Substances

  • 4-methylideneimidazole-5-one
  • Antineoplastic Agents
  • Cycloparaffins
  • Enediynes
  • Imidazoles
  • Naphthalenes
  • kedarcidin chromophore
  • Tyrosine
  • Phenylalanine
  • Ammonia
  • Lyases
  • Intramolecular Transferases

Associated data

  • GENBANK/JX679499