The genetics of dilated cardiomyopathy: a prioritized candidate gene study of LMNA, TNNT2, TCAP, and PLN

Clin Cardiol. 2013 Oct;36(10):628-33. doi: 10.1002/clc.22193. Epub 2013 Aug 27.

Abstract

Background: Dilated cardiomyopathy (DCM), which is characterized by left ventricular enlargement and systolic dysfunction, is divided into cases with a clear predisposing condition (eg, hypothyroidism, chemotherapeutic agents, alcoholism, ischemia) and those of unknown cause (idiopathic DCM). Many cases (20%-35%) of DCM are familial, implicating a genetic contribution to the etiology. More than 30 genes have been identified, many involving "private" mutations not shared among families. Evidence suggests that nonfamilial cases also have a genetic predisposition, again involving many genes. The goal of this study was to identify mutations in genes associated with DCM in a Québec study sample including familial and nonfamilial DCM cases.

Hypothesis: A prioritized gene study conducted within a framework for the classification of identified genetic variants could yield etiological information even in the absence of family data.

Methods: We sequenced 4 previously identified genes: lamin A/C (LMNA), cardiac troponin T type 2 (TNNT2), titin-cap (TCAP), and phospholamban (PLN).

Results: We discovered a nonsense mutation in the LMNA gene and a frameshift mutation in the TNNT2 gene, as well as other clinically significant variants that were not observed in publicly available databases or in Québec-based controls. PLN was sequenced to investigate a previously published promoter variant. However, our data confirm that this variant does not have a causal role in DCM.

Conclusions: Despite high locus and allele heterogeneity, we demonstrate that a prioritized gene study, combined with next-generation exome-sequencing data, can be fruitful for the identification of DCM mutations.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Adult
  • Aged
  • Aged, 80 and over
  • Calcium-Binding Proteins / genetics*
  • Cardiomyopathy, Dilated / genetics*
  • Case-Control Studies
  • Codon, Nonsense*
  • Connectin / genetics*
  • DNA Mutational Analysis
  • Exome
  • Female
  • Frameshift Mutation*
  • Gene Frequency
  • Genetic Association Studies
  • Genetic Predisposition to Disease
  • Genetic Testing / methods
  • Humans
  • Lamin Type A / genetics*
  • Male
  • Middle Aged
  • Promoter Regions, Genetic
  • Quebec
  • Troponin T / genetics*

Substances

  • Calcium-Binding Proteins
  • Codon, Nonsense
  • Connectin
  • LMNA protein, human
  • Lamin Type A
  • TCAP protein, human
  • TNNT2 protein, human
  • Troponin T
  • phospholamban