Screening, identification, and characterization of a GH43 family β-xylosidase/α-arabinofuranosidase from a compost microbial metagenome

Appl Microbiol Biotechnol. 2015 Nov;99(21):8943-54. doi: 10.1007/s00253-015-6647-5. Epub 2015 May 14.

Abstract

A putative glycoside hydrolase family 43 β-xylosidase/α-arabinofuranosidase (CoXyl43) that promotes plant biomass saccharification was isolated via functional screening of a compost microbial metagenomic library and characterized. CoXyl43 promoted the saccharification of plant biomasses, including xylans (xylan and arabinoxylan), rice straw, and Erianthus, by degrading xylooligosaccharide residues to monosaccharide residues. The recombinant CoXyl43 protein exhibited both β-xylosidase and α-arabinofuranosidase activities for chromogenic substrates, with optimal activity at pH 7.5 and 55 °C. Both of these activities were inactivated by ethanol, dimethylsulfoxide, and zinc and copper ions but were activated by manganese ions. Only the β-xylosidase activity of recombinant CoXyl43 was enhanced in the presence of calcium ions. These results indicate that CoXyl43 exhibits unique enzymatic properties useful for biomass saccharification.

Keywords: Biomass; Glycoside hydrolase family 43; Metagenome; α-arabinofuranosidase; β-xylosidase.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Biomass
  • Cloning, Molecular
  • Enzyme Stability
  • Gene Library
  • Genetic Testing
  • Glycoside Hydrolases / chemistry
  • Glycoside Hydrolases / genetics*
  • Glycoside Hydrolases / isolation & purification
  • Glycoside Hydrolases / metabolism*
  • Hydrogen-Ion Concentration
  • Hydrolysis
  • Metagenome*
  • Oryza / chemistry
  • Plant Stems / chemistry
  • Soil
  • Soil Microbiology*
  • Temperature
  • Xylans / metabolism
  • Xylosidases / chemistry
  • Xylosidases / genetics*
  • Xylosidases / isolation & purification
  • Xylosidases / metabolism*

Substances

  • Soil
  • Xylans
  • Glycoside Hydrolases
  • Xylosidases
  • exo-1,4-beta-D-xylosidase
  • alpha-N-arabinofuranosidase