Ten years of barcoding at the African Centre for DNA Barcoding

Genome. 2017 Jul;60(7):629-638. doi: 10.1139/gen-2016-0198. Epub 2017 Mar 24.

Abstract

The African Centre for DNA Barcoding (ACDB) was established in 2005 as part of a global initiative to accurately and rapidly survey biodiversity using short DNA sequences. The mitochondrial cytochrome c oxidase 1 gene (CO1) was rapidly adopted as the de facto barcode for animals. Following the evaluation of several candidate loci for plants, the Plant Working Group of the Consortium for the Barcoding of Life in 2009 recommended that two plastid genes, rbcLa and matK, be adopted as core DNA barcodes for terrestrial plants. To date, numerous studies continue to test the discriminatory power of these markers across various plant lineages. Over the past decade, we at the ACDB have used these core DNA barcodes to generate a barcode library for southern Africa. To date, the ACDB has contributed more than 21 000 plant barcodes and over 3000 CO1 barcodes for animals to the Barcode of Life Database (BOLD). Building upon this effort, we at the ACDB have addressed questions related to community assembly, biogeography, phylogenetic diversification, and invasion biology. Collectively, our work demonstrates the diverse applications of DNA barcoding in ecology, systematics, evolutionary biology, and conservation.

Keywords: African flora and fauna; CO1; DNA barcoding; applications en écologie; codage à barres de l’ADN; définition d’espèces; ecological applications; flore et faune africaines; matK; rbcLa; species delimitation.

Publication types

  • Review

MeSH terms

  • Africa
  • Animals
  • Biodiversity
  • Chloroplast Proteins / genetics
  • Conservation of Natural Resources
  • DNA Barcoding, Taxonomic / methods
  • DNA Barcoding, Taxonomic / trends*
  • Electron Transport Complex IV / genetics
  • Phylogeny
  • Plants / classification*
  • Plants / genetics

Substances

  • Chloroplast Proteins
  • Electron Transport Complex IV