Effects of Trimethylamine-N-oxide on the Conformation of Peptides and its Implications for Proteins

Phys Rev Lett. 2017 Sep 8;119(10):108102. doi: 10.1103/PhysRevLett.119.108102. Epub 2017 Sep 8.

Abstract

To provide insights into the stabilizing mechanisms of trimethylamine-N-oxide (TMAO) on protein structures, we perform all-atom molecular dynamics simulations of peptides and the Trp-cage miniprotein. The effects of TMAO on the backbone and charged residues of peptides are found to stabilize compact conformations, whereas effects of TMAO on nonpolar residues lead to peptide swelling. This suggests competing mechanisms of TMAO on proteins, which accounts for hydrophobic swelling, backbone collapse, and stabilization of charge-charge interactions. These mechanisms are observed in Trp cage.

MeSH terms

  • Hydrophobic and Hydrophilic Interactions
  • Methylamines / chemistry*
  • Molecular Conformation
  • Molecular Dynamics Simulation*
  • Peptides / chemistry*
  • Proteins / chemistry*

Substances

  • Methylamines
  • Peptides
  • Proteins
  • trimethyloxamine
  • trimethylamine