Elastic Multi-scale Mechanisms: Computation and Biological Evolution

J Mol Evol. 2018 Jan;86(1):47-57. doi: 10.1007/s00239-017-9823-7. Epub 2017 Dec 16.

Abstract

Explanations based on low-level interacting elements are valuable and powerful since they contribute to identify the key mechanisms of biological functions. However, many dynamic systems based on low-level interacting elements with unambiguous, finite, and complete information of initial states generate future states that cannot be predicted, implying an increase of complexity and open-ended evolution. Such systems are like Turing machines, that overlap with dynamical systems that cannot halt. We argue that organisms find halting conditions by distorting these mechanisms, creating conditions for a constant creativity that drives evolution. We introduce a modulus of elasticity to measure the changes in these mechanisms in response to changes in the computed environment. We test this concept in a population of predators and predated cells with chemotactic mechanisms and demonstrate how the selection of a given mechanism depends on the entire population. We finally explore this concept in different frameworks and postulate that the identification of predictive mechanisms is only successful with small elasticity modulus.

Keywords: Computational theory; Elastic mechanisms; Evolution; Open-ended evolution; Systems biology; Turing machines.

MeSH terms

  • Animals
  • Biological Evolution
  • Computational Biology / methods*
  • Computer Simulation
  • Evolution, Molecular
  • Humans
  • Models, Biological
  • Systems Biology / methods*