Alterations upstream from the Shine-Dalgarno region and their effect on bacterial gene expression

Gene. 1985;36(3):211-23. doi: 10.1016/0378-1119(85)90176-3.

Abstract

A vector containing the leftward promoter (pL) as transcription initiation signal and a synthetic, easily adaptable translation initiation region have been constructed. We have used the expression system to assess the relevance of sequences upstream from the Shine-Dalgarno (SD) region in the translational-initiation process. To this end, a series of structural variants of the prototype ribosome-binding site were used to direct the synthesis of both mature human fibroblast interferon and beta-galactosidase (beta-gal). It was found that alterations 5' to the SD element can considerably affect the rate of mRNA translation. The observation that the relative efficiency of the various 5'-untranslated regions depends on the downstream coding information implies that secondary (and/or tertiary) structure formation is of major importance in the initiation process. But an mRNA folding, in which the SD and ATG determinant are set free in single-stranded regions, does not unconditionally guarantee an efficient initiation of translation.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Base Sequence
  • DNA Restriction Enzymes
  • Escherichia coli / enzymology
  • Escherichia coli / genetics
  • Genes*
  • Genes, Bacterial*
  • Genetic Vectors*
  • Humans
  • Interferon Type I / genetics
  • Nucleic Acid Conformation
  • Plasmids
  • Promoter Regions, Genetic*
  • Protein Biosynthesis
  • RNA, Messenger / genetics
  • Ribosomes / metabolism
  • Transcription, Genetic
  • beta-Galactosidase / genetics

Substances

  • Interferon Type I
  • RNA, Messenger
  • DNA Restriction Enzymes
  • beta-Galactosidase

Associated data

  • GENBANK/M12476