Application of CE-MS for the analysis of histones and histone modifications

Methods. 2020 Dec 1:184:125-134. doi: 10.1016/j.ymeth.2020.01.017. Epub 2020 Jan 31.

Abstract

The analysis, identification and quantification of histones and their post-translational modifications plays a central role in chromatin research and in studying epigenetic regulations during physiological processes. In the last decade analytical strategies based on mass spectrometry have been greatly improved for providing a global view of single modification abundances or to determine combinatorial patterns of modifications. Presented here is a newly developed strategy for histone protein analysis and a number of applications are illustrated with an emphasis on PTM characterization. Capillary electrophoresis is coupled to mass spectrometry (CE-MS) and has proven to be a very promising concept as it enables to study intact histones (top-down proteomics) as well as the analysis of enzymatically digested proteins (bottom-up proteomics). This technology combines highly efficient low-flow CE separations with ionization in a single device and offers an orthogonal separation principle to conventional LC-MS analysis, thus expanding the existing analytical repertoire in a perfect manner.

MeSH terms

  • Animals
  • Electrophoresis, Capillary / methods*
  • Histone Code
  • Histones / analysis*
  • Histones / metabolism
  • Humans
  • Mass Spectrometry / methods*
  • Mice
  • Protein Processing, Post-Translational
  • Proteomics / methods*
  • Rats

Substances

  • Histones