The nucleosome acidic patch and H2A ubiquitination underlie mSWI/SNF recruitment in synovial sarcoma

Nat Struct Mol Biol. 2020 Sep;27(9):836-845. doi: 10.1038/s41594-020-0466-9. Epub 2020 Aug 3.

Abstract

Interactions between chromatin-associated proteins and the histone landscape play major roles in dictating genome topology and gene expression. Cancer-specific fusion oncoproteins, which display unique chromatin localization patterns, often lack classical DNA-binding domains, presenting challenges in identifying mechanisms governing their site-specific chromatin targeting and function. Here we identify a minimal region of the human SS18-SSX fusion oncoprotein (the hallmark driver of synovial sarcoma) that mediates a direct interaction between the mSWI/SNF complex and the nucleosome acidic patch. This binding results in altered mSWI/SNF composition and nucleosome engagement, driving cancer-specific mSWI/SNF complex targeting and gene expression. Furthermore, the C-terminal region of SSX confers preferential affinity to repressed, H2AK119Ub-marked nucleosomes, underlying the selective targeting to polycomb-marked genomic regions and synovial sarcoma-specific dependency on PRC1 function. Together, our results describe a functional interplay between a key nucleosome binding hub and a histone modification that underlies the disease-specific recruitment of a major chromatin remodeling complex.

Publication types

  • Research Support, N.I.H., Extramural
  • Research Support, Non-U.S. Gov't

MeSH terms

  • Cell Line, Tumor
  • Chromosomal Proteins, Non-Histone / chemistry
  • Chromosomal Proteins, Non-Histone / metabolism*
  • HEK293 Cells
  • Histones / metabolism*
  • Humans
  • Models, Molecular
  • Neoplasm Proteins / chemistry
  • Neoplasm Proteins / metabolism*
  • Nucleosomes / metabolism
  • Nucleosomes / pathology
  • Oncogene Proteins, Fusion / chemistry
  • Oncogene Proteins, Fusion / metabolism*
  • Protein Conformation
  • Proto-Oncogene Proteins / chemistry
  • Proto-Oncogene Proteins / metabolism*
  • Repressor Proteins / chemistry
  • Repressor Proteins / metabolism*
  • Sarcoma, Synovial / metabolism*
  • Sarcoma, Synovial / pathology
  • Transcription Factors / chemistry
  • Transcription Factors / metabolism*
  • Ubiquitination
  • Ubiquitins / metabolism*

Substances

  • Chromosomal Proteins, Non-Histone
  • Histones
  • Neoplasm Proteins
  • Nucleosomes
  • Oncogene Proteins, Fusion
  • Proto-Oncogene Proteins
  • Repressor Proteins
  • SS18 protein, human
  • SS18-SSX1 fusion protein
  • SWI-SNF-B chromatin-remodeling complex
  • Transcription Factors
  • Ubiquitins
  • chromatin conjugate protein A24
  • synovial sarcoma X breakpoint proteins