Expression and prognostic characteristics of m5 C regulators in low-grade glioma

J Cell Mol Med. 2021 Feb;25(3):1383-1393. doi: 10.1111/jcmm.16221. Epub 2021 Jan 5.

Abstract

Glioma is the most common intracranial malignant tumour. A clear diagnosis and molecular targeted therapy are of great significance for improving the survival time and quality of life of patients with low-grade glioma. 5-methylcytosine methylation is one of the ways of RNA modification, but there are limited studies on the role of m5 C methylation of low-grade glioma. Single-nucleotide variant, RNA expression matrix and corresponding clinical data of low-grade glioma came from public database. The single-nucleotide variant and expression of m5 C regulators were estimated. A prognostic model based on m5 C regulators was constructed by Cox regression. Potential functions of these molecules were assessed by gene set enrichment analysis. DNMT3A mutation was the most frequent among the m5 C regulators in low-grade glioma. NSUN3, TET2, TRDMT1, ALYREF, DNMT3B, DNMT1, NOP2 and NSUN2 were up-regulated. One prognostic model was constructed which had a strong predictive power for the overall survival of low-grade glioma. We studied the expression and prognostic characteristics of m5 C regulators in low-grade glioma, supplied biomarkers for the diagnosis and prognosis and provided the foundation for the study of the pathogenesis of low-grade glioma.

Keywords: RNA methylation; low-grade glioma; m5C; prognosis.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • 5-Methylcytosine / metabolism*
  • Biomarkers, Tumor
  • Computational Biology / methods
  • Gene Expression Profiling
  • Gene Expression Regulation, Neoplastic*
  • Glioma / genetics*
  • Glioma / metabolism*
  • Glioma / mortality*
  • Glioma / pathology
  • Humans
  • Methylation
  • Neoplasm Grading
  • Prognosis
  • RNA / genetics*
  • RNA / metabolism*
  • ROC Curve
  • Transcriptome

Substances

  • Biomarkers, Tumor
  • RNA
  • 5-Methylcytosine

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