Yeast translation elongation factor eEF3 promotes late stages of tRNA translocation

EMBO J. 2021 Mar 15;40(6):e106449. doi: 10.15252/embj.2020106449. Epub 2021 Feb 8.

Abstract

In addition to the conserved translation elongation factors eEF1A and eEF2, fungi require a third essential elongation factor, eEF3. While eEF3 has been implicated in tRNA binding and release at the ribosomal A and E sites, its exact mechanism of action is unclear. Here, we show that eEF3 acts at the mRNA-tRNA translocation step by promoting the dissociation of the tRNA from the E site, but independent of aminoacyl-tRNA recruitment to the A site. Depletion of eEF3 in vivo leads to a general slowdown in translation elongation due to accumulation of ribosomes with an occupied A site. Cryo-EM analysis of native eEF3-ribosome complexes shows that eEF3 facilitates late steps of translocation by favoring non-rotated ribosomal states, as well as by opening the L1 stalk to release the E-site tRNA. Additionally, our analysis provides structural insights into novel translation elongation states, enabling presentation of a revised yeast translation elongation cycle.

Keywords: ABC ATPase; E-site tRNA; L1 stalk; cryo-EM; eEF3.

Publication types

  • Research Support, N.I.H., Extramural
  • Research Support, Non-U.S. Gov't

MeSH terms

  • Cryoelectron Microscopy
  • Peptide Elongation Factors / genetics
  • Peptide Elongation Factors / metabolism*
  • Protein Biosynthesis / genetics*
  • RNA, Messenger / genetics
  • RNA, Transfer / genetics*
  • Ribosomes / metabolism*
  • Saccharomyces cerevisiae / metabolism*
  • Saccharomyces cerevisiae Proteins / genetics
  • Saccharomyces cerevisiae Proteins / metabolism*
  • Translocation, Genetic / genetics

Substances

  • Peptide Elongation Factors
  • RNA, Messenger
  • Saccharomyces cerevisiae Proteins
  • YEF3 protein, S cerevisiae
  • RNA, Transfer

Associated data

  • PDB/7B7D