Stepwise maturation of the peptidyl transferase region of human mitoribosomes

Nat Commun. 2021 Jun 16;12(1):3671. doi: 10.1038/s41467-021-23811-8.

Abstract

Mitochondrial ribosomes are specialized for the synthesis of membrane proteins responsible for oxidative phosphorylation. Mammalian mitoribosomes have diverged considerably from the ancestral bacterial ribosomes and feature dramatically reduced ribosomal RNAs. The structural basis of the mammalian mitochondrial ribosome assembly is currently not well understood. Here we present eight distinct assembly intermediates of the human large mitoribosomal subunit involving seven assembly factors. We discover that the NSUN4-MTERF4 dimer plays a critical role in the process by stabilizing the 16S rRNA in a conformation that exposes the functionally important regions of rRNA for modification by the MRM2 methyltransferase and quality control interactions with the conserved mitochondrial GTPase MTG2 that contacts the sarcin-ricin loop and the immature active site. The successive action of these factors leads to the formation of the peptidyl transferase active site of the mitoribosome and the folding of the surrounding rRNA regions responsible for interactions with tRNAs and the small ribosomal subunit.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Catalytic Domain
  • Cryoelectron Microscopy
  • Humans
  • Methyltransferases / chemistry
  • Methyltransferases / metabolism
  • Mitochondrial Ribosomes / chemistry*
  • Mitochondrial Ribosomes / metabolism
  • Models, Molecular
  • Monomeric GTP-Binding Proteins / chemistry
  • Monomeric GTP-Binding Proteins / metabolism
  • Nucleic Acid Conformation
  • Peptidyl Transferases / chemistry*
  • Peptidyl Transferases / metabolism
  • Protein Multimerization
  • RNA, Ribosomal / chemistry
  • RNA, Ribosomal / metabolism
  • Ribosome Subunits, Large / chemistry
  • Ribosome Subunits, Large / metabolism
  • Transcription Factors / metabolism

Substances

  • MTERF4 protein, human
  • RNA, Ribosomal
  • Transcription Factors
  • MRM2 protein, human
  • Methyltransferases
  • NSUN4 protein, human
  • Peptidyl Transferases
  • MTG2 protein, human
  • Monomeric GTP-Binding Proteins