Gld2 activity and RNA specificity is dynamically regulated by phosphorylation and interaction with QKI-7

RNA Biol. 2021 Oct 15;18(sup1):397-408. doi: 10.1080/15476286.2021.1952540. Epub 2021 Jul 21.

Abstract

In the cell, RNA abundance is dynamically controlled by transcription and decay rates. Posttranscriptional nucleotide addition at the RNA 3' end is a means of regulating mRNA and RNA stability and activity, as well as marking RNAs for degradation. The human nucleotidyltransferase Gld2 polyadenylates mRNAs and monoadenylates microRNAs, leading to an increase in RNA stability. The broad substrate range of Gld2 and its role in controlling RNA stability make the regulation of Gld2 activity itself imperative. Gld2 activity can be regulated by post-translational phosphorylation via the oncogenic kinase Akt1 and other kinases, leading to either increased or almost abolished enzymatic activity, and here we confirm that Akt1 phosphorylates Gld2 in a cellular context. Another means to control Gld2 RNA specificity and activity is the interaction with RNA binding proteins. Known interactors are QKI-7 and CPEB, which recruit Gld2 to specific miRNAs and mRNAs. We investigate the interplay between five phosphorylation sites in the N-terminal domain of Gld2 and three RNA binding proteins. We found that the activity and RNA specificity of Gld2 is dynamically regulated by this network. Binding of QKI-7 or phosphorylation at S62 relieves the autoinhibitory function of the Gld2 N-terminal domain. Binding of QKI-7 to a short peptide sequence within the N-terminal domain can also override the deactivation caused by Akt1 phosphorylation at S116. Our data revealed that Gld2 substrate specificity and activity can be dynamically regulated to match the cellular need of RNA stabilization and turnover.

Keywords: RNA stability; microRNA; nucleotidyltransferase; oncogenic kinase; protein–protein interaction.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Adenine / chemistry*
  • Adenine / metabolism
  • Gene Expression Regulation*
  • HEK293 Cells
  • Humans
  • MicroRNAs / genetics
  • MicroRNAs / metabolism*
  • Phosphorylation
  • Polynucleotide Adenylyltransferase / genetics
  • Polynucleotide Adenylyltransferase / metabolism*
  • RNA Stability*
  • RNA, Messenger / genetics
  • RNA, Messenger / metabolism*
  • RNA-Binding Proteins / genetics
  • RNA-Binding Proteins / metabolism*
  • Substrate Specificity
  • mRNA Cleavage and Polyadenylation Factors / genetics
  • mRNA Cleavage and Polyadenylation Factors / metabolism*

Substances

  • MicroRNAs
  • QKI protein, human
  • RNA, Messenger
  • RNA-Binding Proteins
  • mRNA Cleavage and Polyadenylation Factors
  • Polynucleotide Adenylyltransferase
  • TENT2 protein, human
  • Adenine

Grants and funding

This research was funded by an Alexander Graham Bell Canada Graduate Scholarship (Doctoral) from the Natural Sciences and Engineering Research Council of Canada to C.Z.C., the Natural Sciences and Engineering Research Council of Canada to IUH (RGPIN 04776-2014), and the Ontario Ministry of Research and Innovation (ER-18-14-183). Canadian Network for Research and Innovation in Machining Technology.