Unveiling a Ghost Proteome in the Glioblastoma Non-Coding RNAs

Front Cell Dev Biol. 2021 Dec 23:9:703583. doi: 10.3389/fcell.2021.703583. eCollection 2021.

Abstract

Glioblastoma is the most common brain cancer in adults. Nevertheless, the median survival time is 15 months, if treated with at least a near total resection and followed by radiotherapy in association with temozolomide. In glioblastoma (GBM), variations of non-coding ribonucleic acid (ncRNA) expression have been demonstrated in tumor processes, especially in the regulation of major signaling pathways. Moreover, many ncRNAs present in their sequences an Open Reading Frame (ORF) allowing their translations into proteins, so-called alternative proteins (AltProt) and constituting the "ghost proteome." This neglected world in GBM has been shown to be implicated in protein-protein interaction (PPI) with reference proteins (RefProt) reflecting involvement in signaling pathways linked to cellular mobility and transfer RNA regulation. More recently, clinical studies have revealed that AltProt is also involved in the patient's survival and bad prognosis. We thus propose to review the ncRNAs involved in GBM and highlight their function in the disease.

Keywords: LncRNA—long noncoding RNA; SEPs; alternative proteins; brain cancer; glioblastoma; mass spectrometry—LC-MS/MS; ncRNA (noncoding RNA).

Publication types

  • Review