Genome-Wide CRISPR/Cas9-Based Screening for Deubiquitinase Subfamily Identifies Ubiquitin-Specific Protease 11 as a Novel Regulator of Osteogenic Differentiation

Int J Mol Sci. 2022 Jan 13;23(2):856. doi: 10.3390/ijms23020856.

Abstract

The osteoblast differentiation capacity of mesenchymal stem cells must be tightly regulated, as inadequate bone mineralization can lead to osteoporosis, and excess bone formation can cause the heterotopic ossification of soft tissues. The balanced protein level of Msh homeobox 1 (MSX1) is critical during normal osteogenesis. To understand the factors that prevent MSX1 protein degradation, the identification of deubiquitinating enzymes (DUBs) for MSX1 is essential. In this study, we performed loss-of-function-based screening for DUBs regulating MSX1 protein levels using the CRISPR/Cas9 system. We identified ubiquitin-specific protease 11 (USP11) as a protein regulator of MSX1 and further demonstrated that USP11 interacts and prevents MSX1 protein degradation by its deubiquitinating activity. Overexpression of USP11 enhanced the expression of several osteogenic transcriptional factors in human mesenchymal stem cells (hMSCs). Additionally, differentiation studies revealed reduced calcification and alkaline phosphatase activity in USP11-depleted cells, while overexpression of USP11 enhanced the differentiation potential of hMSCs. These results indicate the novel role of USP11 during osteogenic differentiation and suggest USP11 as a potential target for bone regeneration.

Keywords: protein degradation; regenerative medicine; stem cells; ubiquitination.

MeSH terms

  • CRISPR-Cas Systems*
  • Cell Differentiation / genetics*
  • Deubiquitinating Enzymes / genetics*
  • Deubiquitinating Enzymes / metabolism
  • Gene Expression Regulation
  • Genome-Wide Association Study / methods*
  • Humans
  • MSX1 Transcription Factor / genetics
  • MSX1 Transcription Factor / metabolism
  • Mesenchymal Stem Cells / cytology
  • Mesenchymal Stem Cells / metabolism
  • Osteogenesis / genetics*
  • Proteolysis
  • Regenerative Medicine
  • Thiolester Hydrolases / genetics*
  • Thiolester Hydrolases / metabolism
  • Transcription Factors / metabolism
  • Ubiquitination

Substances

  • MSX1 Transcription Factor
  • MSX1 protein, human
  • Transcription Factors
  • USP11 protein, human
  • Thiolester Hydrolases
  • Deubiquitinating Enzymes