Cryo-EM structure of an active bacterial TIR-STING filament complex

Nature. 2022 Aug;608(7924):803-807. doi: 10.1038/s41586-022-04999-1. Epub 2022 Jul 20.

Abstract

Stimulator of interferon genes (STING) is an antiviral signalling protein that is broadly conserved in both innate immunity in animals and phage defence in prokaryotes1-4. Activation of STING requires its assembly into an oligomeric filament structure through binding of a cyclic dinucleotide4-13, but the molecular basis of STING filament assembly and extension remains unknown. Here we use cryogenic electron microscopy to determine the structure of the active Toll/interleukin-1 receptor (TIR)-STING filament complex from a Sphingobacterium faecium cyclic-oligonucleotide-based antiphage signalling system (CBASS) defence operon. Bacterial TIR-STING filament formation is driven by STING interfaces that become exposed on high-affinity recognition of the cognate cyclic dinucleotide signal c-di-GMP. Repeating dimeric STING units stack laterally head-to-head through surface interfaces, which are also essential for human STING tetramer formation and downstream immune signalling in mammals5. The active bacterial TIR-STING structure reveals further cross-filament contacts that brace the assembly and coordinate packing of the associated TIR NADase effector domains at the base of the filament to drive NAD+ hydrolysis. STING interface and cross-filament contacts are essential for cell growth arrest in vivo and reveal a stepwise mechanism of activation whereby STING filament assembly is required for subsequent effector activation. Our results define the structural basis of STING filament formation in prokaryotic antiviral signalling.

MeSH terms

  • Animals
  • Antiviral Agents / metabolism
  • Bacterial Proteins* / chemistry
  • Bacterial Proteins* / immunology
  • Bacterial Proteins* / metabolism
  • Bacterial Proteins* / ultrastructure
  • Bacteriophages / immunology
  • Cryoelectron Microscopy*
  • Dinucleoside Phosphates / metabolism
  • Humans
  • Immunity, Innate
  • Membrane Proteins* / chemistry
  • Membrane Proteins* / immunology
  • Membrane Proteins* / metabolism
  • Membrane Proteins* / ultrastructure
  • Operon / genetics
  • Receptors, Interleukin-1* / chemistry
  • Receptors, Interleukin-1* / immunology
  • Receptors, Interleukin-1* / metabolism
  • Receptors, Interleukin-1* / ultrastructure
  • Sphingobacterium* / chemistry
  • Sphingobacterium* / genetics
  • Sphingobacterium* / ultrastructure
  • Sphingobacterium* / virology
  • Toll-Like Receptors* / chemistry
  • Toll-Like Receptors* / immunology
  • Toll-Like Receptors* / metabolism
  • Toll-Like Receptors* / ultrastructure

Substances

  • Antiviral Agents
  • Bacterial Proteins
  • Dinucleoside Phosphates
  • Membrane Proteins
  • Receptors, Interleukin-1
  • Toll-Like Receptors

Supplementary concepts

  • Sphingobacterium faecium