scRNA-seq reveals ATPIF1 activity in control of T cell antitumor activity

Oncoimmunology. 2022 Aug 20;11(1):2114740. doi: 10.1080/2162402X.2022.2114740. eCollection 2022.

Abstract

ATP synthase inhibitory factor 1 (ATPIF1) is a mitochondrial protein with an activity in inhibition of F1Fo-ATP synthase. ATPIF1 activity remains unknown in the control of immune activity of T cells. In this study, we identified ATPIF1 activity in the induction of CD8+ T cell function in tumor models through genetic approaches. ATPIF1 gene inactivation impaired the immune activities of CD8+ T cells leading to quick tumor growth (B16 melanoma and Lewis lung cancer) in ATPIF1-KO mice. The KO T cells exhibited a reduced activity in proliferation and IFN-γ secretion with metabolic reprogramming of increased glycolysis and decreased oxidative phosphorylation (OXPHOS) after activation. T cell exhaustion was increased in the tumor infiltrating leukocytes (TILs) of KO mice as revealed by the single-cell RNA sequencing (scRNA-seq) and confirmed by flow cytometry. In contrast, ATPIF1 overexpression in T cells increased expression of IFN-γ and Granzyme B, subset of central memory T cells in CAR-T cells, and survival rate of NALM-6 tumor-bearing mice. These data demonstrate that ATPIF1 deficiency led to tumor immune deficiency through induction of T cell exhaustion. ATPIF1 overexpression enhanced the T cell tumor immunity. Therefore, ATPIF1 is a potential molecular target in the modulation of antitumor immunity of CD8+ T cells in cancer immunotherapy. Induction of ATPIF1 activity may promote CAR-T activity in cancer therapy.

Keywords: ATPIF1; CD19 CAR-T; CD8+ T cells; single cell RNA sequencing.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Adenosine Triphosphate
  • Animals
  • CD8-Positive T-Lymphocytes*
  • Immunotherapy
  • Melanoma, Experimental* / genetics
  • Melanoma, Experimental* / therapy
  • Mice
  • Single-Cell Analysis

Substances

  • Adenosine Triphosphate

Grants and funding

This work was supported by the Higher Education Discipline Innovation Project [D20036]; National Natural Science Foundation of China-Henan Joint Fund [U1904131]; Henan Provincial Science and Technology Research Project [222102310048].