In Silico Identification and Validation of Pyroptosis-Related Genes in Chlamydia Respiratory Infection

Int J Mol Sci. 2023 Sep 1;24(17):13570. doi: 10.3390/ijms241713570.

Abstract

The incidence of Chlamydia trachomatis respiratory infection is increasing, and its pathogenesis is still unclear. Pyroptosis, as a mode of inflammatory cell death, plays a vital role in the occurrence and development of Chlamydia trachomatis respiratory infection. In this study, the potential pyroptosis-related genes involved in Chlamydia trachomatis respiratory infection were identified by constructing a mouse model of C. muridarum infection combined with bioinformatics analysis. Through in-depth analysis of the RNA sequencing data, 13 differentially expressed pyroptosis-related genes were screened, including 1 downregulated gene and 12 upregulated genes. Gene ontology (GO) analysis showed that these genes mainly regulate inflammatory responses and produce IL-1β. Protein-protein interaction network analysis identified eight hub genes of interest: Tnf, Tlr2, Il1b, Nlrp3, Tlr9, Mefv, Zbp1 and Tnfaip3. Through quantitative real-time PCR (qPCR) analysis, we found that the expression of these genes in the lungs of C. muridarum-infected mice was significantly reduced, consistent with the bioinformatics results. At the same time, we detected elevated levels of caspase-3, gasdermin D and gasdermin E proteins in the lungs of C. muridarum-infected mice, demonstrating that Chlamydia trachomatis infection does induce pyroptosis. We then predicted nine miRNAs targeting these hub genes and constructed a key competitive endogenous RNA (ceRNA) network. In summary, we identified six key pyroptosis-related genes involved in Chlamydia trachomatis respiratory infection and constructed a ceRNA network associated with these genes. These findings will improve understanding of the molecular mechanisms underlying pyroptosis in Chlamydia trachomatis respiratory infections.

Keywords: Chlamydia trachomatis infection; competitive endogenous RNA regulatory network; immune infiltration; inflammatory death; pyroptosis.

MeSH terms

  • Animals
  • Chlamydia Infections* / genetics
  • Chlamydia*
  • Gasdermins
  • Mice
  • MicroRNAs* / genetics
  • Pyroptosis / genetics
  • RNA-Binding Proteins

Substances

  • Gasdermins
  • MicroRNAs
  • Zbp1 protein, mouse
  • RNA-Binding Proteins