RNA-mediated ribonucleoprotein assembly controls TDP-43 nuclear retention

PLoS Biol. 2024 Feb 29;22(2):e3002527. doi: 10.1371/journal.pbio.3002527. eCollection 2024 Feb.

Abstract

TDP-43 is an essential RNA-binding protein strongly implicated in the pathogenesis of neurodegenerative disorders characterized by cytoplasmic aggregates and loss of nuclear TDP-43. The protein shuttles between nucleus and cytoplasm, yet maintaining predominantly nuclear TDP-43 localization is important for TDP-43 function and for inhibiting cytoplasmic aggregation. We previously demonstrated that specific RNA binding mediates TDP-43 self-assembly and biomolecular condensation, requiring multivalent interactions via N- and C-terminal domains. Here, we show that these complexes play a key role in TDP-43 nuclear retention. TDP-43 forms macromolecular complexes with a wide range of size distribution in cells and we find that defects in RNA binding or inter-domain interactions, including phase separation, impair the assembly of the largest species. Our findings suggest that recruitment into these macromolecular complexes prevents cytoplasmic egress of TDP-43 in a size-dependent manner. Our observations uncover fundamental mechanisms controlling TDP-43 cellular homeostasis, whereby regulation of RNA-mediated self-assembly modulates TDP-43 nucleocytoplasmic distribution. Moreover, these findings highlight pathways that may be implicated in TDP-43 proteinopathies and identify potential therapeutic targets.

MeSH terms

  • Amyotrophic Lateral Sclerosis / genetics
  • DNA-Binding Proteins* / metabolism
  • Humans
  • Macromolecular Substances / metabolism
  • RNA
  • Ribonucleoproteins* / metabolism
  • TDP-43 Proteinopathies* / genetics
  • TDP-43 Proteinopathies* / metabolism

Substances

  • DNA-Binding Proteins
  • Macromolecular Substances
  • Ribonucleoproteins
  • RNA
  • TARDBP protein, human