Mono-methylated histones control PARP-1 in chromatin and transcription

Elife. 2024 May 1:13:RP91482. doi: 10.7554/eLife.91482.

Abstract

PARP-1 is central to transcriptional regulation under both normal and stress conditions, with the governing mechanisms yet to be fully understood. Our biochemical and ChIP-seq-based analyses showed that PARP-1 binds specifically to active histone marks, particularly H4K20me1. We found that H4K20me1 plays a critical role in facilitating PARP-1 binding and the regulation of PARP-1-dependent loci during both development and heat shock stress. Here, we report that the sole H4K20 mono-methylase, pr-set7, and parp-1 Drosophila mutants undergo developmental arrest. RNA-seq analysis showed an absolute correlation between PR-SET7- and PARP-1-dependent loci expression, confirming co-regulation during developmental phases. PARP-1 and PR-SET7 are both essential for activating hsp70 and other heat shock genes during heat stress, with a notable increase of H4K20me1 at their gene body. Mutating pr-set7 disrupts monomethylation of H4K20 along heat shock loci and abolish PARP-1 binding there. These data strongly suggest that H4 monomethylation is a key triggering point in PARP-1 dependent processes in chromatin.

Keywords: D. melanogaster; H3K27me1; H3K36me1; H3K4me1; H4K20me1; PARP-1; PR-SET7; genetics; genomics.

Publication types

  • Research Support, N.I.H., Extramural
  • Research Support, Non-U.S. Gov't

MeSH terms

  • Animals
  • Chromatin* / genetics
  • Chromatin* / metabolism
  • Drosophila Proteins* / genetics
  • Drosophila Proteins* / metabolism
  • Drosophila melanogaster / genetics
  • Drosophila melanogaster / metabolism
  • Heat-Shock Response
  • Histones* / metabolism
  • Methylation
  • Poly (ADP-Ribose) Polymerase-1* / genetics
  • Poly (ADP-Ribose) Polymerase-1* / metabolism
  • Transcription, Genetic*

Substances

  • Chromatin
  • Drosophila Proteins
  • Histones
  • Poly (ADP-Ribose) Polymerase-1
  • Parp protein, Drosophila

Associated data

  • GEO/GSE217730
  • GEO/GSE222877
  • GEO/GSE29611
  • GEO/GSE206022
  • GEO/GSE15292
  • GEO/GSE47258
  • GEO/GSE47260
  • GEO/GSE47289
  • GEO/GSE47249
  • GEO/GSE47254
  • GEO/GSE47282