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Page 1
Guiding the choice of informatics software and tools for lipidomics research applications.
Ni Z, Wölk M, Jukes G, Mendivelso Espinosa K, Ahrends R, Aimo L, Alvarez-Jarreta J, Andrews S, Andrews R, Bridge A, Clair GC, Conroy MJ, Fahy E, Gaud C, Goracci L, Hartler J, Hoffmann N, Kopczyinki D, Korf A, Lopez-Clavijo AF, Malik A, Ackerman JM, Molenaar MR, O'Donovan C, Pluskal T, Shevchenko A, Slenter D, Siuzdak G, Kutmon M, Tsugawa H, Willighagen EL, Xia J, O'Donnell VB, Fedorova M. Ni Z, et al. Among authors: ackerman jm. Nat Methods. 2023 Feb;20(2):193-204. doi: 10.1038/s41592-022-01710-0. Epub 2022 Dec 21. Nat Methods. 2023. PMID: 36543939 Free PMC article. Review.
Quantitative Fragmentation Model for Bottom-Up Shotgun Lipidomics.
Schuhmann K, Moon H, Thomas H, Ackerman JM, Groessl M, Wagner N, Kellmann M, Henry I, Nadler A, Shevchenko A. Schuhmann K, et al. Among authors: ackerman jm. Anal Chem. 2019 Sep 17;91(18):12085-12093. doi: 10.1021/acs.analchem.9b03270. Epub 2019 Sep 5. Anal Chem. 2019. PMID: 31441640 Free PMC article.
Nonalcoholic fatty liver disease stratification by liver lipidomics.
Vvedenskaya O, Rose TD, Knittelfelder O, Palladini A, Wodke JAH, Schuhmann K, Ackerman JM, Wang Y, Has C, Brosch M, Thangapandi VR, Buch S, Züllig T, Hartler J, Köfeler HC, Röcken C, Coskun Ü, Klipp E, von Schoenfels W, Gross J, Schafmayer C, Hampe J, Pauling JK, Shevchenko A. Vvedenskaya O, et al. Among authors: ackerman jm. J Lipid Res. 2021;62:100104. doi: 10.1016/j.jlr.2021.100104. Epub 2021 Aug 10. J Lipid Res. 2021. PMID: 34384788 Free PMC article.
Loss of hepatic Mboat7 leads to liver fibrosis.
Thangapandi VR, Knittelfelder O, Brosch M, Patsenker E, Vvedenskaya O, Buch S, Hinz S, Hendricks A, Nati M, Herrmann A, Rekhade DR, Berg T, Matz-Soja M, Huse K, Klipp E, Pauling JK, Wodke JA, Miranda Ackerman J, Bonin MV, Aigner E, Datz C, von Schönfels W, Nehring S, Zeissig S, Röcken C, Dahl A, Chavakis T, Stickel F, Shevchenko A, Schafmayer C, Hampe J, Subramanian P. Thangapandi VR, et al. Among authors: miranda ackerman j. Gut. 2021 May;70(5):940-950. doi: 10.1136/gutjnl-2020-320853. Epub 2020 Jun 26. Gut. 2021. PMID: 32591434 Free PMC article.
Shotgun lipidomics-based characterization of the landscape of lipid metabolism in colorectal cancer.
Wang Y, Hinz S, Uckermann O, Hönscheid P, von Schönfels W, Burmeister G, Hendricks A, Ackerman JM, Baretton GB, Hampe J, Brosch M, Schafmayer C, Shevchenko A, Zeissig S. Wang Y, et al. Among authors: ackerman jm. Biochim Biophys Acta Mol Cell Biol Lipids. 2020 Mar;1865(3):158579. doi: 10.1016/j.bbalip.2019.158579. Epub 2019 Nov 30. Biochim Biophys Acta Mol Cell Biol Lipids. 2020. PMID: 31794862