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Page 1
Reproducibility in systems biology modelling.
Mol Syst Biol. 2021 Feb;17(2):e9982. doi: 10.15252/msb.20209982.
Mol Syst Biol. 2021.
PMID: 33620773
Free PMC article.
BioSimulators: a central registry of simulation engines and services for recommending specific tools.
Shaikh B, Smith LP, Vasilescu D, Marupilla G, Wilson M, Agmon E, Agnew H, Andrews SS, Anwar A, Beber ME, Bergmann FT, Brooks D, Brusch L, Calzone L, Choi K, Cooper J, Detloff J, Drawert B, Dumontier M, Ermentrout GB, Faeder JR, Freiburger AP, Fröhlich F, Funahashi A, Garny A, Gennari JH, Gleeson P, Goelzer A, Haiman Z, Hasenauer J, Hellerstein JL, Hermjakob H, Hoops S, Ison JC, Jahn D, Jakubowski HV, Jordan R, Kalaš M, König M, Liebermeister W, Sheriff RSM, Mandal S, McDougal R, Medley JK, Mendes P, Müller R, Myers CJ, Naldi A, Nguyen TVN, Nickerson DP, Olivier BG, Patoliya D, Paulevé L, Petzold LR, Priya A, Rampadarath AK, Rohwer JM, Saglam AS, Singh D, Sinha A, Snoep J, Sorby H, Spangler R, Starruß J, Thomas PJ, van Niekerk D, Weindl D, Zhang F, Zhukova A, Goldberg AP, Schaff JC, Blinov ML, Sauro HM, Moraru II, Karr JR.
Shaikh B, et al. Among authors: nguyen tvn.
Nucleic Acids Res. 2022 Jul 5;50(W1):W108-W114. doi: 10.1093/nar/gkac331.
Nucleic Acids Res. 2022.
PMID: 35524558
Free PMC article.
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BioModels: expanding horizons to include more modelling approaches and formats.
Glont M, Nguyen TVN, Graesslin M, Hälke R, Ali R, Schramm J, Wimalaratne SM, Kothamachu VB, Rodriguez N, Swat MJ, Eils J, Eils R, Laibe C, Malik-Sheriff RS, Chelliah V, Le Novère N, Hermjakob H.
Glont M, et al. Among authors: nguyen tvn.
Nucleic Acids Res. 2018 Jan 4;46(D1):D1248-D1253. doi: 10.1093/nar/gkx1023.
Nucleic Acids Res. 2018.
PMID: 29106614
Free PMC article.
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BioModels-15 years of sharing computational models in life science.
Malik-Sheriff RS, Glont M, Nguyen TVN, Tiwari K, Roberts MG, Xavier A, Vu MT, Men J, Maire M, Kananathan S, Fairbanks EL, Meyer JP, Arankalle C, Varusai TM, Knight-Schrijver V, Li L, Dueñas-Roca C, Dass G, Keating SM, Park YM, Buso N, Rodriguez N, Hucka M, Hermjakob H.
Malik-Sheriff RS, et al. Among authors: nguyen tvn.
Nucleic Acids Res. 2020 Jan 8;48(D1):D407-D415. doi: 10.1093/nar/gkz1055.
Nucleic Acids Res. 2020.
PMID: 31701150
Free PMC article.
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BioModels Parameters: a treasure trove of parameter values from published systems biology models.
Glont M, Arankalle C, Tiwari K, Nguyen TVN, Hermjakob H, Malik-Sheriff RS.
Glont M, et al. Among authors: nguyen tvn.
Bioinformatics. 2020 Nov 1;36(17):4649-4654. doi: 10.1093/bioinformatics/btaa560.
Bioinformatics. 2020.
PMID: 32573648
Free PMC article.
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