Nam-Phuong D Nguyen[Author] - Search Results

Year	Number of Results
2009	1
2015	1
2018	1
2019	2
2020	2
2021	1
2024	0

1

Ultra-large alignments using phylogeny-aware profiles.

Nguyen NP, Mirarab S, Kumar K, Warnow T. Nguyen NP, et al. Genome Biol. 2015 Jun 16;16(1):124. doi: 10.1186/s13059-015-0688-z. Genome Biol. 2015. PMID: 26076734 Free PMC article.

2

Metagenomic Analysis Reveals Previously Undescribed Bat Coronavirus Strains in Eswatini.

Shapiro JT, Mollerup S, Jensen RH, Olofsson JK, Nguyen ND, Hansen TA, Vinner L, Monadjem A, McCleery RA, Hansen AJ. Shapiro JT, et al. Among authors: nguyen nd. Ecohealth. 2021 Dec;18(4):421-428. doi: 10.1007/s10393-021-01567-3. Epub 2021 Dec 30. Ecohealth. 2021. PMID: 34970712 Free PMC article.

3

Exploring the landscape of focal amplifications in cancer using AmpliconArchitect.

Deshpande V, Luebeck J, Nguyen ND, Bakhtiari M, Turner KM, Schwab R, Carter H, Mischel PS, Bafna V. Deshpande V, et al. Among authors: nguyen nd. Nat Commun. 2019 Jan 23;10(1):392. doi: 10.1038/s41467-018-08200-y. Nat Commun. 2019. PMID: 30674876 Free PMC article.

4

Fully automated sequence alignment methods are comparable to, and much faster than, traditional methods in large data sets: an example with hepatitis B virus.

Catanach TA, Sweet AD, Nguyen ND, Peery RM, Debevec AH, Thomer AK, Owings AC, Boyd BM, Katz AD, Soto-Adames FN, Allen JM. Catanach TA, et al. Among authors: nguyen nd. PeerJ. 2019 Jan 3;7:e6142. doi: 10.7717/peerj.6142. eCollection 2019. PeerJ. 2019. PMID: 30627489 Free PMC article.

5

Longitudinal assessment of tumor development using cancer avatars derived from genetically engineered pluripotent stem cells.

Koga T, Chaim IA, Benitez JA, Markmiller S, Parisian AD, Hevner RF, Turner KM, Hessenauer FM, D'Antonio M, Nguyen ND, Saberi S, Ma J, Miki S, Boyer AD, Ravits J, Frazer KA, Bafna V, Chen CC, Mischel PS, Yeo GW, Furnari FB. Koga T, et al. Among authors: nguyen nd. Nat Commun. 2020 Jan 28;11(1):550. doi: 10.1038/s41467-020-14312-1. Nat Commun. 2020. PMID: 31992716 Free PMC article.

6

Author Correction: Longitudinal assessment of tumor development using cancer avatars derived from genetically engineered pluripotent stem cells.

Koga T, Chaim IA, Benitez JA, Markmiller S, Parisian AD, Hevner RF, Turner KM, Hessenauer FM, D'Antonio M, Nguyen ND, Saberi S, Ma J, Miki S, Boyer AD, Ravits J, Frazer KA, Bafna V, Chen CC, Mischel PS, Yeo GW, Furnari FB. Koga T, et al. Among authors: nguyen nd. Nat Commun. 2020 Apr 20;11(1):1958. doi: 10.1038/s41467-020-15828-2. Nat Commun. 2020. PMID: 32312984 Free PMC article.

7

ViFi: accurate detection of viral integration and mRNA fusion reveals indiscriminate and unregulated transcription in proximal genomic regions in cervical cancer.

Nguyen ND, Deshpande V, Luebeck J, Mischel PS, Bafna V. Nguyen ND, et al. Nucleic Acids Res. 2018 Apr 20;46(7):3309-3325. doi: 10.1093/nar/gky180. Nucleic Acids Res. 2018. PMID: 29579309 Free PMC article.

8

iBioSim: a tool for the analysis and design of genetic circuits.

Myers CJ, Barker N, Jones K, Kuwahara H, Madsen C, Nguyen NP. Myers CJ, et al. Among authors: nguyen np. Bioinformatics. 2009 Nov 1;25(21):2848-9. doi: 10.1093/bioinformatics/btp457. Epub 2009 Jul 23. Bioinformatics. 2009. PMID: 19628507

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