Casper Kaae Sønderby[Author] - Search Results

Year	Number of Results
2013	1
2014	1
2015	3
2016	1
2017	3
2019	2
2020	1
2021	1
2024	0

1

Improved metagenome binning and assembly using deep variational autoencoders.

Nissen JN, Johansen J, Allesøe RL, Sønderby CK, Armenteros JJA, Grønbech CH, Jensen LJ, Nielsen HB, Petersen TN, Winther O, Rasmussen S. Nissen JN, et al. Among authors: sonderby ck. Nat Biotechnol. 2021 May;39(5):555-560. doi: 10.1038/s41587-020-00777-4. Epub 2021 Jan 4. Nat Biotechnol. 2021. PMID: 33398153

2

scVAE: variational auto-encoders for single-cell gene expression data.

Grønbech CH, Vording MF, Timshel PN, Sønderby CK, Pers TH, Winther O. Grønbech CH, et al. Among authors: sonderby ck. Bioinformatics. 2020 Aug 15;36(16):4415-4422. doi: 10.1093/bioinformatics/btaa293. Bioinformatics. 2020. PMID: 32415966

3

SignalP 5.0 improves signal peptide predictions using deep neural networks.

Almagro Armenteros JJ, Tsirigos KD, Sønderby CK, Petersen TN, Winther O, Brunak S, von Heijne G, Nielsen H. Almagro Armenteros JJ, et al. Among authors: sonderby ck. Nat Biotechnol. 2019 Apr;37(4):420-423. doi: 10.1038/s41587-019-0036-z. Epub 2019 Feb 18. Nat Biotechnol. 2019. PMID: 30778233

4

DeepLoc: prediction of protein subcellular localization using deep learning.

Almagro Armenteros JJ, Sønderby CK, Sønderby SK, Nielsen H, Winther O. Almagro Armenteros JJ, et al. Among authors: sonderby ck. Bioinformatics. 2017 Nov 1;33(21):3387-3395. doi: 10.1093/bioinformatics/btx431. Bioinformatics. 2017. PMID: 29036616

5

NetSurfP-2.0: Improved prediction of protein structural features by integrated deep learning.

Klausen MS, Jespersen MC, Nielsen H, Jensen KK, Jurtz VI, Sønderby CK, Sommer MOA, Winther O, Nielsen M, Petersen B, Marcatili P. Klausen MS, et al. Among authors: sonderby ck. Proteins. 2019 Jun;87(6):520-527. doi: 10.1002/prot.25674. Epub 2019 Mar 9. Proteins. 2019. PMID: 30785653

6

An introduction to deep learning on biological sequence data: examples and solutions.

Jurtz VI, Johansen AR, Nielsen M, Almagro Armenteros JJ, Nielsen H, Sønderby CK, Winther O, Sønderby SK. Jurtz VI, et al. Among authors: sonderby ck. Bioinformatics. 2017 Nov 15;33(22):3685-3690. doi: 10.1093/bioinformatics/btx531. Bioinformatics. 2017. PMID: 28961695 Free PMC article.

7

Diffusion weighted imaging with circularly polarized oscillating gradients.

Lundell H, Sønderby CK, Dyrby TB. Lundell H, et al. Among authors: sonderby ck. Magn Reson Med. 2015 Mar;73(3):1171-6. doi: 10.1002/mrm.25211. Epub 2014 Mar 17. Magn Reson Med. 2015. PMID: 24639209 Free article.

8

BloodSpot: a database of gene expression profiles and transcriptional programs for healthy and malignant haematopoiesis.

Bagger FO, Sasivarevic D, Sohi SH, Laursen LG, Pundhir S, Sønderby CK, Winther O, Rapin N, Porse BT. Bagger FO, et al. Among authors: sonderby ck. Nucleic Acids Res. 2016 Jan 4;44(D1):D917-24. doi: 10.1093/nar/gkv1101. Epub 2015 Oct 26. Nucleic Acids Res. 2016. PMID: 26507857 Free PMC article.

9

DeepLoc: prediction of protein subcellular localization using deep learning.

Almagro Armenteros JJ, Sønderby CK, Sønderby SK, Nielsen H, Winther O. Almagro Armenteros JJ, et al. Among authors: sonderby ck. Bioinformatics. 2017 Dec 15;33(24):4049. doi: 10.1093/bioinformatics/btx548. Bioinformatics. 2017. PMID: 29028934 No abstract available.

10

Orientationally invariant metrics of apparent compartment eccentricity from double pulsed field gradient diffusion experiments.

Jespersen SN, Lundell H, Sønderby CK, Dyrby TB. Jespersen SN, et al. Among authors: sonderby ck. NMR Biomed. 2013 Dec;26(12):1647-62. doi: 10.1002/nbm.2999. Epub 2013 Aug 23. NMR Biomed. 2013. PMID: 24038641

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