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Page 1
3D chromatin connectivity underlies replication origin efficiency in mouse embryonic stem cells.
Nucleic Acids Res. 2022 Nov 28;50(21):12149-12165. doi: 10.1093/nar/gkac1111.
Nucleic Acids Res. 2022.
PMID: 36453993
Free PMC article.
Super-resolution visualization of chromatin loop folding in human lymphoblastoid cells using interferometric photoactivated localization microscopy.
Parteka-Tojek Z, Zhu JJ, Lee B, Jodkowska K, Wang P, Aaron J, Chew TL, Banecki K, Plewczynski D, Ruan Y.
Parteka-Tojek Z, et al. Among authors: jodkowska k.
Sci Rep. 2022 May 20;12(1):8582. doi: 10.1038/s41598-022-12568-9.
Sci Rep. 2022.
PMID: 35595799
Free PMC article.
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Publisher Correction: Super‑resolution visualization of chromatin loop folding in human lymphoblastoid cells using interferometric photoactivated localization microscopy.
Parteka-Tojek Z, Zhu JJ, Lee B, Jodkowska K, Wang P, Aaron J, Chew TL, Banecki K, Plewczynski D, Ruan Y.
Parteka-Tojek Z, et al. Among authors: jodkowska k.
Sci Rep. 2022 Dec 20;12(1):22014. doi: 10.1038/s41598-022-26502-6.
Sci Rep. 2022.
PMID: 36539456
Free PMC article.
No abstract available.
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3D-GNOME 2.0: a three-dimensional genome modeling engine for predicting structural variation-driven alterations of chromatin spatial structure in the human genome.
Wlasnowolski M, Sadowski M, Czarnota T, Jodkowska K, Szalaj P, Tang Z, Ruan Y, Plewczynski D.
Wlasnowolski M, et al. Among authors: jodkowska k.
Nucleic Acids Res. 2020 Jul 2;48(W1):W170-W176. doi: 10.1093/nar/gkaa388.
Nucleic Acids Res. 2020.
PMID: 32442297
Free PMC article.
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A short G1 phase imposes constitutive replication stress and fork remodelling in mouse embryonic stem cells.
Ahuja AK, Jodkowska K, Teloni F, Bizard AH, Zellweger R, Herrador R, Ortega S, Hickson ID, Altmeyer M, Mendez J, Lopes M.
Ahuja AK, et al. Among authors: jodkowska k.
Nat Commun. 2016 Feb 15;7:10660. doi: 10.1038/ncomms10660.
Nat Commun. 2016.
PMID: 26876348
Free PMC article.
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A systematic analyses of different bioinformatics pipelines for genomic data and its impact on deep learning models for chromatin loop prediction.
Kumar Halder A, Agarwal A, Jodkowska K, Plewczynski D.
Kumar Halder A, et al. Among authors: jodkowska k.
Brief Funct Genomics. 2024 Mar 30:elae009. doi: 10.1093/bfgp/elae009. Online ahead of print.
Brief Funct Genomics. 2024.
PMID: 38555493
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Multilayer OMIC Data in Medullary Thyroid Carcinoma Identifies the STAT3 Pathway as a Potential Therapeutic Target in RETM918T Tumors.
Mancikova V, Montero-Conde C, Perales-Paton J, Fernandez A, Santacana M, Jodkowska K, Inglada-Pérez L, Castelblanco E, Borrego S, Encinas M, Matias-Guiu X, Fraga M, Robledo M.
Mancikova V, et al. Among authors: jodkowska k.
Clin Cancer Res. 2017 Mar 1;23(5):1334-1345. doi: 10.1158/1078-0432.CCR-16-0947. Epub 2016 Sep 12.
Clin Cancer Res. 2017.
PMID: 27620278
Free article.
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