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Page 1
The EN-TEx resource of multi-tissue personal epigenomes & variant-impact models.
Cell. 2023 Mar 30;186(7):1493-1511.e40. doi: 10.1016/j.cell.2023.02.018.
Cell. 2023.
PMID: 37001506
Free PMC article.
The ENCODE4 long-read RNA-seq collection reveals distinct classes of transcript structure diversity.
Reese F, Williams B, Balderrama-Gutierrez G, Wyman D, Çelik MH, Rebboah E, Rezaie N, Trout D, Razavi-Mohseni M, Jiang Y, Borsari B, Morabito S, Liang HY, McGill CJ, Rahmanian S, Sakr J, Jiang S, Zeng W, Carvalho K, Weimer AK, Dionne LA, McShane A, Bedi K, Elhajjajy SI, Upchurch S, Jou J, Youngworth I, Gabdank I, Sud P, Jolanki O, Strattan JS, Kagda MS, Snyder MP, Hitz BC, Moore JE, Weng Z, Bennett D, Reinholdt L, Ljungman M, Beer MA, Gerstein MB, Pachter L, Guigó R, Wold BJ, Mortazavi A.
Reese F, et al. Among authors: borsari b.
bioRxiv [Preprint]. 2023 May 16:2023.05.15.540865. doi: 10.1101/2023.05.15.540865.
bioRxiv. 2023.
PMID: 37292896
Free PMC article.
Preprint.
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Functional annotation of human long noncoding RNAs via molecular phenotyping.
Ramilowski JA, Yip CW, Agrawal S, Chang JC, Ciani Y, Kulakovskiy IV, Mendez M, Ooi JLC, Ouyang JF, Parkinson N, Petri A, Roos L, Severin J, Yasuzawa K, Abugessaisa I, Akalin A, Antonov IV, Arner E, Bonetti A, Bono H, Borsari B, Brombacher F, Cameron CJ, Cannistraci CV, Cardenas R, Cardon M, Chang H, Dostie J, Ducoli L, Favorov A, Fort A, Garrido D, Gil N, Gimenez J, Guler R, Handoko L, Harshbarger J, Hasegawa A, Hasegawa Y, Hashimoto K, Hayatsu N, Heutink P, Hirose T, Imada EL, Itoh M, Kaczkowski B, Kanhere A, Kawabata E, Kawaji H, Kawashima T, Kelly ST, Kojima M, Kondo N, Koseki H, Kouno T, Kratz A, Kurowska-Stolarska M, Kwon ATJ, Leek J, Lennartsson A, Lizio M, López-Redondo F, Luginbühl J, Maeda S, Makeev VJ, Marchionni L, Medvedeva YA, Minoda A, Müller F, Muñoz-Aguirre M, Murata M, Nishiyori H, Nitta KR, Noguchi S, Noro Y, Nurtdinov R, Okazaki Y, Orlando V, Paquette D, Parr CJC, Rackham OJL, Rizzu P, Sánchez Martinez DF, Sandelin A, Sanjana P, Semple CAM, Shibayama Y, Sivaraman DM, Suzuki T, Szumowski SC, Tagami M, Taylor MS, Terao C, Thodberg M, Thongjuea S, Tripathi V, Ulitsky I, Verardo R, Vorontsov IE, Yamamoto C, Young RS, Baillie JK, Forrest ARR, Guigó R, Hoffman …
See abstract for full author list ➔
Ramilowski JA, et al. Among authors: borsari b.
Genome Res. 2020 Jul;30(7):1060-1072. doi: 10.1101/gr.254219.119. Epub 2020 Jul 27.
Genome Res. 2020.
PMID: 32718982
Free PMC article.
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CTCF is dispensable for immune cell transdifferentiation but facilitates an acute inflammatory response.
Stik G, Vidal E, Barrero M, Cuartero S, Vila-Casadesús M, Mendieta-Esteban J, Tian TV, Choi J, Berenguer C, Abad A, Borsari B, le Dily F, Cramer P, Marti-Renom MA, Stadhouders R, Graf T.
Stik G, et al. Among authors: borsari b.
Nat Genet. 2020 Jul;52(7):655-661. doi: 10.1038/s41588-020-0643-0. Epub 2020 Jun 8.
Nat Genet. 2020.
PMID: 32514124
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Enhancers with tissue-specific activity are enriched in intronic regions.
Borsari B, Villegas-Mirón P, Pérez-Lluch S, Turpin I, Laayouni H, Segarra-Casas A, Bertranpetit J, Guigó R, Acosta S.
Borsari B, et al.
Genome Res. 2021 Aug;31(8):1325-1336. doi: 10.1101/gr.270371.120. Epub 2021 Jul 21.
Genome Res. 2021.
PMID: 34290042
Free PMC article.
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Identification and analysis of splicing quantitative trait loci across multiple tissues in the human genome.
Garrido-Martín D, Borsari B, Calvo M, Reverter F, Guigó R.
Garrido-Martín D, et al. Among authors: borsari b.
Nat Commun. 2021 Feb 1;12(1):727. doi: 10.1038/s41467-020-20578-2.
Nat Commun. 2021.
PMID: 33526779
Free PMC article.
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Integrative transcriptomic analysis suggests new autoregulatory splicing events coupled with nonsense-mediated mRNA decay.
Pervouchine D, Popov Y, Berry A, Borsari B, Frankish A, Guigó R.
Pervouchine D, et al. Among authors: borsari b.
Nucleic Acids Res. 2019 Jun 4;47(10):5293-5306. doi: 10.1093/nar/gkz193.
Nucleic Acids Res. 2019.
PMID: 30916337
Free PMC article.
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