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Did you mean ruichi zhang[Author] (10 results)?
The 3D Genome Structure of Single Cells.
Zhou T, Zhang R, Ma J. Zhou T, et al. Among authors: zhang r. Annu Rev Biomed Data Sci. 2021 Jul 20;4:21-41. doi: 10.1146/annurev-biodatasci-020121-084709. Epub 2021 Apr 23. Annu Rev Biomed Data Sci. 2021. PMID: 34465168 Review.
Predicting the antigenic evolution of SARS-COV-2 with deep learning.
Han W, Chen N, Xu X, Sahil A, Zhou J, Li Z, Zhong H, Gao E, Zhang R, Wang Y, Sun S, Cheung PP, Gao X. Han W, et al. Among authors: zhang r. Nat Commun. 2023 Jun 13;14(1):3478. doi: 10.1038/s41467-023-39199-6. Nat Commun. 2023. PMID: 37311849 Free PMC article.
scGHOST: Identifying single-cell 3D genome subcompartments.
Xiong K, Zhang R, Ma J. Xiong K, et al. Among authors: zhang r. bioRxiv [Preprint]. 2023 May 25:2023.05.24.542032. doi: 10.1101/2023.05.24.542032. bioRxiv. 2023. PMID: 37292994 Free PMC article. Updated. Preprint.
scGHOST: identifying single-cell 3D genome subcompartments.
Xiong K, Zhang R, Ma J. Xiong K, et al. Among authors: zhang r. Nat Methods. 2024 May;21(5):814-822. doi: 10.1038/s41592-024-02230-9. Epub 2024 Apr 8. Nat Methods. 2024. PMID: 38589516 Free PMC article.
Single-cell multi-scale footprinting reveals the modular organization of DNA regulatory elements.
Hu Y, Ma S, Kartha VK, Duarte FM, Horlbeck M, Zhang R, Shrestha R, Labade A, Kletzien H, Meliki A, Castillo A, Durand N, Mattei E, Anderson LJ, Tay T, Earl AS, Shoresh N, Epstein CB, Wagers A, Buenrostro JD. Hu Y, et al. Among authors: zhang r. bioRxiv [Preprint]. 2023 Mar 29:2023.03.28.533945. doi: 10.1101/2023.03.28.533945. bioRxiv. 2023. PMID: 37034577 Free PMC article. Preprint.
SPIN reveals genome-wide landscape of nuclear compartmentalization.
Wang Y, Zhang Y, Zhang R, van Schaik T, Zhang L, Sasaki T, Peric-Hupkes D, Chen Y, Gilbert DM, van Steensel B, Belmont AS, Ma J. Wang Y, et al. Among authors: zhang r. Genome Biol. 2021 Jan 14;22(1):36. doi: 10.1186/s13059-020-02253-3. Genome Biol. 2021. PMID: 33446254 Free PMC article.
37 results