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Page 1
Integrated intracellular organization and its variations in human iPS cells.
Nature. 2023 Jan;613(7943):345-354. doi: 10.1038/s41586-022-05563-7. Epub 2023 Jan 4.
Nature. 2023.
PMID: 36599983
Free PMC article.
A deep generative model of 3D single-cell organization.
Donovan-Maiye RM, Brown JM, Chan CK, Ding L, Yan C, Gaudreault N, Theriot JA, Maleckar MM, Knijnenburg TA, Johnson GR.
Donovan-Maiye RM, et al.
PLoS Comput Biol. 2022 Jan 18;18(1):e1009155. doi: 10.1371/journal.pcbi.1009155. eCollection 2022 Jan.
PLoS Comput Biol. 2022.
PMID: 35041651
Free PMC article.
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Cell states beyond transcriptomics: Integrating structural organization and gene expression in hiPSC-derived cardiomyocytes.
Gerbin KA, Grancharova T, Donovan-Maiye RM, Hendershott MC, Anderson HG, Brown JM, Chen J, Dinh SQ, Gehring JL, Johnson GR, Lee H, Nath A, Nelson AM, Sluzewski MF, Viana MP, Yan C, Zaunbrecher RJ, Cordes Metzler KR, Gaudreault N, Knijnenburg TA, Rafelski SM, Theriot JA, Gunawardane RN.
Gerbin KA, et al. Among authors: donovan maiye rm.
Cell Syst. 2021 Jun 16;12(6):670-687.e10. doi: 10.1016/j.cels.2021.05.001. Epub 2021 May 26.
Cell Syst. 2021.
PMID: 34043964
Free article.
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Atlas of Transcription Factor Binding Sites from ENCODE DNase Hypersensitivity Data across 27 Tissue Types.
Funk CC, Casella AM, Jung S, Richards MA, Rodriguez A, Shannon P, Donovan-Maiye R, Heavner B, Chard K, Xiao Y, Glusman G, Ertekin-Taner N, Golde TE, Toga A, Hood L, Van Horn JD, Kesselman C, Foster I, Madduri R, Price ND, Ament SA.
Funk CC, et al. Among authors: donovan maiye r.
Cell Rep. 2020 Aug 18;32(7):108029. doi: 10.1016/j.celrep.2020.108029.
Cell Rep. 2020.
PMID: 32814038
Free PMC article.
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A comprehensive analysis of gene expression changes in a high replicate and open-source dataset of differentiating hiPSC-derived cardiomyocytes.
Grancharova T, Gerbin KA, Rosenberg AB, Roco CM, Arakaki JE, DeLizo CM, Dinh SQ, Donovan-Maiye RM, Hirano M, Nelson AM, Tang J, Theriot JA, Yan C, Menon V, Palecek SP, Seelig G, Gunawardane RN.
Grancharova T, et al. Among authors: donovan maiye rm.
Sci Rep. 2021 Aug 4;11(1):15845. doi: 10.1038/s41598-021-94732-1.
Sci Rep. 2021.
PMID: 34349150
Free PMC article.
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Biophysical comparison of ATP synthesis mechanisms shows a kinetic advantage for the rotary process.
Anandakrishnan R, Zhang Z, Donovan-Maiye R, Zuckerman DM.
Anandakrishnan R, et al. Among authors: donovan maiye r.
Proc Natl Acad Sci U S A. 2016 Oct 4;113(40):11220-11225. doi: 10.1073/pnas.1608533113. Epub 2016 Sep 19.
Proc Natl Acad Sci U S A. 2016.
PMID: 27647911
Free PMC article.
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Systematic Testing of Belief-Propagation Estimates for Absolute Free Energies in Atomistic Peptides and Proteins.
Donovan-Maiye RM, Langmead CJ, Zuckerman DM.
Donovan-Maiye RM, et al.
J Chem Theory Comput. 2018 Jan 9;14(1):426-443. doi: 10.1021/acs.jctc.7b00775. Epub 2017 Dec 22.
J Chem Theory Comput. 2018.
PMID: 29185777
Free PMC article.
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