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2019 | 3 |
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Page 1
Multi-omics and potential applications in wine production.
Curr Opin Biotechnol. 2019 Apr;56:172-178. doi: 10.1016/j.copbio.2018.11.014. Epub 2018 Dec 11.
Curr Opin Biotechnol. 2019.
PMID: 30530242
Review.
Population-level impacts of antibiotic usage on the human gut microbiome.
Lee K, Raguideau S, Sirén K, Asnicar F, Cumbo F, Hildebrand F, Segata N, Cha CJ, Quince C.
Lee K, et al. Among authors: siren k.
Nat Commun. 2023 Mar 2;14(1):1191. doi: 10.1038/s41467-023-36633-7.
Nat Commun. 2023.
PMID: 36864029
Free PMC article.
Item in Clipboard
Unifying the known and unknown microbial coding sequence space.
Vanni C, Schechter MS, Acinas SG, Barberán A, Buttigieg PL, Casamayor EO, Delmont TO, Duarte CM, Eren AM, Finn RD, Kottmann R, Mitchell A, Sánchez P, Siren K, Steinegger M, Gloeckner FO, Fernàndez-Guerra A.
Vanni C, et al. Among authors: siren k.
Elife. 2022 Mar 31;11:e67667. doi: 10.7554/eLife.67667.
Elife. 2022.
PMID: 35356891
Free PMC article.
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Rapid discovery of novel prophages using biological feature engineering and machine learning.
Sirén K, Millard A, Petersen B, Gilbert MTP, Clokie MRJ, Sicheritz-Pontén T.
Sirén K, et al.
NAR Genom Bioinform. 2021 Jan 6;3(1):lqaa109. doi: 10.1093/nargab/lqaa109. eCollection 2021 Mar.
NAR Genom Bioinform. 2021.
PMID: 33575651
Free PMC article.
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From Trees to Clouds: PhageClouds for Fast Comparison of ∼640,000 Phage Genomic Sequences and Host-Centric Visualization Using Genomic Network Graphs.
Rangel-Pineros G, Millard A, Michniewski S, Scanlan D, Sirén K, Reyes A, Petersen B, Clokie MRJ, Sicheritz-Pontén T.
Rangel-Pineros G, et al. Among authors: siren k.
Phage (New Rochelle). 2021 Dec 1;2(4):194-203. doi: 10.1089/phage.2021.0008. Epub 2021 Dec 16.
Phage (New Rochelle). 2021.
PMID: 36147515
Free PMC article.
Item in Clipboard
Automated supervised learning pipeline for non-targeted GC-MS data analysis.
Sirén K, Fischer U, Vestner J.
Sirén K, et al.
Anal Chim Acta X. 2019 Jan 10;1:100005. doi: 10.1016/j.acax.2019.100005. eCollection 2019 Mar.
Anal Chim Acta X. 2019.
PMID: 33117972
Free PMC article.
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Taxonomic and Functional Characterization of the Microbial Community During Spontaneous in vitro Fermentation of Riesling Must.
Sirén K, Mak SST, Melkonian C, Carøe C, Swiegers JH, Molenaar D, Fischer U, Gilbert MTP.
Sirén K, et al.
Front Microbiol. 2019 Apr 9;10:697. doi: 10.3389/fmicb.2019.00697. eCollection 2019.
Front Microbiol. 2019.
PMID: 31024486
Free PMC article.
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