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Page 1
Experimental Design for Time-Series RNA-Seq Analysis of Gene Expression and Alternative Splicing.
Methods Mol Biol. 2022;2398:173-188. doi: 10.1007/978-1-0716-1912-4_14.
Methods Mol Biol. 2022.
PMID: 34674176
A high quality Arabidopsis transcriptome for accurate transcript-level analysis of alternative splicing.
Zhang R, Calixto CPG, Marquez Y, Venhuizen P, Tzioutziou NA, Guo W, Spensley M, Entizne JC, Lewandowska D, Ten Have S, Frei Dit Frey N, Hirt H, James AB, Nimmo HG, Barta A, Kalyna M, Brown JWS.
Zhang R, et al. Among authors: tzioutziou na.
Nucleic Acids Res. 2017 May 19;45(9):5061-5073. doi: 10.1093/nar/gkx267.
Nucleic Acids Res. 2017.
PMID: 28402429
Free PMC article.
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Rapid and Dynamic Alternative Splicing Impacts the Arabidopsis Cold Response Transcriptome.
Calixto CPG, Guo W, James AB, Tzioutziou NA, Entizne JC, Panter PE, Knight H, Nimmo HG, Zhang R, Brown JWS.
Calixto CPG, et al. Among authors: tzioutziou na.
Plant Cell. 2018 Jul;30(7):1424-1444. doi: 10.1105/tpc.18.00177. Epub 2018 May 15.
Plant Cell. 2018.
PMID: 29764987
Free PMC article.
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Cold-Dependent Expression and Alternative Splicing of Arabidopsis Long Non-coding RNAs.
Calixto CPG, Tzioutziou NA, James AB, Hornyik C, Guo W, Zhang R, Nimmo HG, Brown JWS.
Calixto CPG, et al. Among authors: tzioutziou na.
Front Plant Sci. 2019 Feb 28;10:235. doi: 10.3389/fpls.2019.00235. eCollection 2019.
Front Plant Sci. 2019.
PMID: 30891054
Free PMC article.
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3D RNA-seq: a powerful and flexible tool for rapid and accurate differential expression and alternative splicing analysis of RNA-seq data for biologists.
Guo W, Tzioutziou NA, Stephen G, Milne I, Calixto CP, Waugh R, Brown JWS, Zhang R.
Guo W, et al. Among authors: tzioutziou na.
RNA Biol. 2021 Nov;18(11):1574-1587. doi: 10.1080/15476286.2020.1858253. Epub 2020 Dec 19.
RNA Biol. 2021.
PMID: 33345702
Free PMC article.
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AtRTD - a comprehensive reference transcript dataset resource for accurate quantification of transcript-specific expression in Arabidopsis thaliana.
Zhang R, Calixto CP, Tzioutziou NA, James AB, Simpson CG, Guo W, Marquez Y, Kalyna M, Patro R, Eyras E, Barta A, Nimmo HG, Brown JW.
Zhang R, et al. Among authors: tzioutziou na.
New Phytol. 2015 Oct;208(1):96-101. doi: 10.1111/nph.13545. Epub 2015 Jun 25.
New Phytol. 2015.
PMID: 26111100
Free PMC article.
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How does temperature affect splicing events? Isoform switching of splicing factors regulates splicing of LATE ELONGATED HYPOCOTYL (LHY).
James AB, Calixto CPG, Tzioutziou NA, Guo W, Zhang R, Simpson CG, Jiang W, Nimmo GA, Brown JWS, Nimmo HG.
James AB, et al. Among authors: tzioutziou na.
Plant Cell Environ. 2018 Jul;41(7):1539-1550. doi: 10.1111/pce.13193. Epub 2018 May 2.
Plant Cell Environ. 2018.
PMID: 29532482
Free PMC article.
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